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  5. Solyc07g008860

Solyc07g008860


Description : transducin family protein / WD-40 repeat family protein (AHRD V3.3 *** AT1G71840.1)


Gene families : OG_42_0003449 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0003449_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Solanum release: Solyc07g008860
Cluster HCCA clusters: Cluster_34

Target Alias Description ECC score Gene Family Method Actions
Glyma.09G057500 No alias transducin family protein / WD-40 repeat family protein 0.03 Orthogroups_2024-Update
Kfl00021_0100 kfl00021_0100_v1.1 (at1g71840 : 323.0) transducin family protein / WD-40... 0.03 Orthogroups_2024-Update
Sopen07g004790 No alias WD domain, G-beta repeat 0.03 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0005515 protein binding IEA InterProScan predictions
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Type GO Term Name Evidence Source
MF GO:0003735 structural constituent of ribosome IEP Predicted GO
MF GO:0005198 structural molecule activity IEP Predicted GO
CC GO:0005840 ribosome IEP Predicted GO
BP GO:0006412 translation IEP Predicted GO
BP GO:0006518 peptide metabolic process IEP Predicted GO
MF GO:0008536 Ran GTPase binding IEP Predicted GO
MF GO:0017016 Ras GTPase binding IEP Predicted GO
MF GO:0019899 enzyme binding IEP Predicted GO
MF GO:0031267 small GTPase binding IEP Predicted GO
BP GO:0043043 peptide biosynthetic process IEP Predicted GO
CC GO:0043228 non-membrane-bounded organelle IEP Predicted GO
CC GO:0043232 intracellular non-membrane-bounded organelle IEP Predicted GO
BP GO:0043603 cellular amide metabolic process IEP Predicted GO
BP GO:0043604 amide biosynthetic process IEP Predicted GO
MF GO:0051020 GTPase binding IEP Predicted GO
CC GO:1990904 ribonucleoprotein complex IEP Predicted GO
InterPro domains Description Start Stop
IPR001680 WD40_repeat 105 138
IPR001680 WD40_repeat 272 309
IPR001680 WD40_repeat 354 390
IPR001680 WD40_repeat 146 180
IPR001680 WD40_repeat 227 265
IPR001680 WD40_repeat 320 350
IPR001680 WD40_repeat 188 222
No external refs found!