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  5. Solyc07g008890

Solyc07g008890


Description : Pentatricopeptide repeat superfamily protein (AHRD V3.3 *** A0A061GRI5_THECC)


Gene families : OG_42_0000001 (Orthogroups_2024-Update) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Solanum release: Solyc07g008890
Cluster HCCA clusters: Cluster_166

Target Alias Description ECC score Gene Family Method Actions
GRMZM2G380195 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.02 Orthogroups_2024-Update
GRMZM2G455587 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.02 Orthogroups_2024-Update
Glyma.11G008800 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.03 Orthogroups_2024-Update
Glyma.17G165800 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.02 Orthogroups_2024-Update
HORVU1Hr1G019670.6 No alias Unknown function 0.03 Orthogroups_2024-Update
Seita.8G121200.1 No alias Unknown function 0.05 Orthogroups_2024-Update
Sobic.001G016300.2 No alias Unknown function 0.03 Orthogroups_2024-Update
Solyc03g114660 No alias Pentatricopeptide repeat-containing protein (AHRD V3.3... 0.02 Orthogroups_2024-Update
Sopen03g035770 No alias PPR repeat family 0.03 Orthogroups_2024-Update
Sopen12g021390 No alias PPR repeat 0.03 Orthogroups_2024-Update

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0002161 aminoacyl-tRNA editing activity IEP Predicted GO
MF GO:0003840 obsolete gamma-glutamyltransferase activity IEP Predicted GO
MF GO:0003954 NADH dehydrogenase activity IEP Predicted GO
MF GO:0004470 malic enzyme activity IEP Predicted GO
MF GO:0004471 malate dehydrogenase (decarboxylating) (NAD+) activity IEP Predicted GO
MF GO:0004812 aminoacyl-tRNA ligase activity IEP Predicted GO
BP GO:0006418 tRNA aminoacylation for protein translation IEP Predicted GO
BP GO:0006575 cellular modified amino acid metabolic process IEP Predicted GO
BP GO:0006749 glutathione metabolic process IEP Predicted GO
BP GO:0006790 sulfur compound metabolic process IEP Predicted GO
MF GO:0008137 NADH dehydrogenase (ubiquinone) activity IEP Predicted GO
MF GO:0016615 malate dehydrogenase activity IEP Predicted GO
MF GO:0016651 oxidoreductase activity, acting on NAD(P)H IEP Predicted GO
MF GO:0016655 oxidoreductase activity, acting on NAD(P)H, quinone or similar compound as acceptor IEP Predicted GO
MF GO:0016875 ligase activity, forming carbon-oxygen bonds IEP Predicted GO
BP GO:0043038 amino acid activation IEP Predicted GO
BP GO:0043039 tRNA aminoacylation IEP Predicted GO
MF GO:0050136 NADH dehydrogenase (quinone) activity IEP Predicted GO
MF GO:0051287 NAD binding IEP Predicted GO
MF GO:0140101 catalytic activity, acting on a tRNA IEP Predicted GO
InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 32 71
IPR002885 Pentatricopeptide_repeat 148 192
IPR002885 Pentatricopeptide_repeat 349 395
IPR002885 Pentatricopeptide_repeat 246 295
IPR002885 Pentatricopeptide_repeat 423 442
IPR002885 Pentatricopeptide_repeat 120 139
IPR002885 Pentatricopeptide_repeat 323 346
No external refs found!