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  5. Solyc07g009220

Solyc07g009220


Description : Pentatricopeptide repeat-containing family protein (AHRD V3.3 *** B9I405_POPTR)


Gene families : OG_42_0000001 (Orthogroups_2024-Update) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Solanum release: Solyc07g009220
Cluster HCCA clusters: Cluster_54

Target Alias Description ECC score Gene Family Method Actions
94907 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.04 Orthogroups_2024-Update
Bradi1g12697 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.03 Orthogroups_2024-Update
Bradi1g27320 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.03 Orthogroups_2024-Update
Bradi1g54840 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.04 Orthogroups_2024-Update
Bradi2g09441 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.03 Orthogroups_2024-Update
Bradi2g53140 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.03 Orthogroups_2024-Update
Bradi4g33270 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.03 Orthogroups_2024-Update
Brara.H03086.1 No alias Unknown function 0.03 Orthogroups_2024-Update
GRMZM2G000674 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.02 Orthogroups_2024-Update
GRMZM2G020008 No alias mitochondrial RNAediting factor 1 0.02 Orthogroups_2024-Update
GRMZM2G060337 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.02 Orthogroups_2024-Update
GRMZM2G423538 No alias Pentatricopeptide repeat (PPR-like) superfamily protein 0.02 Orthogroups_2024-Update
GRMZM2G455587 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.02 Orthogroups_2024-Update
GRMZM2G456114 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.02 Orthogroups_2024-Update
GRMZM2G462625 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.03 Orthogroups_2024-Update
GRMZM2G474929 No alias mitochondrial editing factor 21 0.02 Orthogroups_2024-Update
Glyma.05G026400 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.03 Orthogroups_2024-Update
Glyma.13G119700 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.03 Orthogroups_2024-Update
HORVU3Hr1G058070.2 No alias Unknown function 0.04 Orthogroups_2024-Update
HORVU3Hr1G085770.2 No alias RNA editing factor *(CRR2) 0.02 Orthogroups_2024-Update
HORVU6Hr1G063760.2 No alias Unknown function 0.03 Orthogroups_2024-Update
LOC_Os03g13230 No alias pentatricopeptide, putative, expressed 0.03 Orthogroups_2024-Update
MA_103698g0030 No alias (at3g13770 : 453.0) Pentatricopeptide repeat (PPR)... 0.05 Orthogroups_2024-Update
MA_3317g0020 No alias (at4g13650 : 607.0) Pentatricopeptide repeat (PPR)... 0.03 Orthogroups_2024-Update
MA_97789g0010 No alias (at3g26540 : 452.0) Tetratricopeptide repeat (TPR)-like... 0.03 Orthogroups_2024-Update
PSME_00004346-RA No alias (at4g18750 : 679.0) Encodes a pentatricopeptide (PPR)... 0.03 Orthogroups_2024-Update
Potri.002G014800 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.03 Orthogroups_2024-Update
Potri.002G239600 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.02 Orthogroups_2024-Update
Potri.003G164900 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.03 Orthogroups_2024-Update
Potri.004G059400 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.03 Orthogroups_2024-Update
Potri.004G124400 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.02 Orthogroups_2024-Update
Potri.005G215500 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.05 Orthogroups_2024-Update
Potri.006G105700 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.02 Orthogroups_2024-Update
Potri.018G040100 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.02 Orthogroups_2024-Update
Seita.1G076000.1 No alias Unknown function 0.03 Orthogroups_2024-Update
Seita.1G237400.1 No alias Unknown function 0.05 Orthogroups_2024-Update
Seita.2G177900.1 No alias Unknown function 0.03 Orthogroups_2024-Update
Seita.2G203900.1 No alias RNA editing factor *(OTP87) 0.03 Orthogroups_2024-Update
Seita.9G068200.1 No alias RNA editing factor *(DEK36) 0.03 Orthogroups_2024-Update
Seita.9G355700.1 No alias Unknown function 0.03 Orthogroups_2024-Update
Seita.9G477500.1 No alias Unknown function 0.04 Orthogroups_2024-Update
Sobic.005G008400.2 No alias Unknown function 0.03 Orthogroups_2024-Update
Sobic.010G258600.1 No alias Unknown function 0.03 Orthogroups_2024-Update
Sopen01g032600 No alias PPR repeat family 0.02 Orthogroups_2024-Update
Sopen02g039140 No alias PPR repeat 0.03 Orthogroups_2024-Update
Sopen03g003770 No alias PPR repeat family 0.04 Orthogroups_2024-Update
Sopen03g034990 No alias PPR repeat family 0.02 Orthogroups_2024-Update
Sopen04g008620 No alias PPR repeat 0.02 Orthogroups_2024-Update
Sopen07g026910 No alias PPR repeat family 0.02 Orthogroups_2024-Update
Sopen09g035030 No alias PPR repeat family 0.02 Orthogroups_2024-Update
Sopen10g003810 No alias PPR repeat 0.05 Orthogroups_2024-Update
Sopen11g026910 No alias PPR repeat family 0.03 Orthogroups_2024-Update
Sopen12g002530 No alias PPR repeat 0.02 Orthogroups_2024-Update

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0003916 DNA topoisomerase activity IEP Predicted GO
MF GO:0005509 calcium ion binding IEP Predicted GO
CC GO:0005694 chromosome IEP Predicted GO
BP GO:0006265 DNA topological change IEP Predicted GO
BP GO:0006835 dicarboxylic acid transport IEP Predicted GO
BP GO:0007034 vacuolar transport IEP Predicted GO
BP GO:0015711 organic anion transport IEP Predicted GO
BP GO:0015740 C4-dicarboxylate transport IEP Predicted GO
BP GO:0015743 malate transport IEP Predicted GO
BP GO:0015849 organic acid transport IEP Predicted GO
BP GO:0032259 methylation IEP Predicted GO
BP GO:0046942 carboxylic acid transport IEP Predicted GO
BP GO:0071103 DNA conformation change IEP Predicted GO
InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 170 191
IPR002885 Pentatricopeptide_repeat 473 499
IPR002885 Pentatricopeptide_repeat 295 343
IPR002885 Pentatricopeptide_repeat 195 238
IPR002885 Pentatricopeptide_repeat 396 446
No external refs found!