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  5. LOC_Os01g37350

LOC_Os01g37350


Description : retrotransposon protein, putative, Ty3-gypsy subclass, expressed


Gene families : OG_42_0000004 (Orthogroups_2024-Update) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Oryza release: LOC_Os01g37350
Cluster HCCA clusters: cluster_0101

Target Alias Description ECC score Gene Family Method Actions
LOC_Os03g29864 No alias retrotransposon protein, putative, unclassified, expressed 0.03 Orthogroups_2024-Update
PSME_00024374-RA No alias no hits & (original description: no original description) 0.02 Orthogroups_2024-Update
Sopen01g025930 No alias Reverse transcriptase (RNA-dependent DNA polymerase) 0.02 Orthogroups_2024-Update
evm.model.tig00021758.17 No alias (p31843|rrpo_oenbe : 98.2) RNA-directed DNA polymerase... 0.01 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEA InterProScan predictions
MF GO:0004523 RNA-DNA hybrid ribonuclease activity IEA InterProScan predictions
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Type GO Term Name Evidence Source
MF GO:0003993 acid phosphatase activity IEP Predicted GO
MF GO:0004527 exonuclease activity IEP Predicted GO
MF GO:0016627 oxidoreductase activity, acting on the CH-CH group of donors IEP Predicted GO
InterPro domains Description Start Stop
IPR000477 RT_dom 9 134
IPR002156 RNaseH_domain 368 485
No external refs found!