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  5. LOC_Os01g37380

LOC_Os01g37380


Description : transposon protein, putative, unclassified, expressed


Gene families : OG_42_0000103 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000103_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Oryza release: LOC_Os01g37380
Cluster HCCA clusters: cluster_0145

Target Alias Description ECC score Gene Family Method Actions
Bradi1g37775 No alias Function unknown 0.02 Orthogroups_2024-Update
Brara.E03337.1 No alias Unknown function 0.03 Orthogroups_2024-Update
Solyc08g008560 No alias No description available 0.03 Orthogroups_2024-Update
Solyc12g019360 No alias No description available 0.02 Orthogroups_2024-Update
Sopen01g037270 No alias SWIM zinc finger 0.02 Orthogroups_2024-Update
Sopen03g011670 No alias Retrotransposon gag protein 0.02 Orthogroups_2024-Update
Sopen11g029160 No alias SWIM zinc finger 0.02 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0008270 zinc ion binding IEA InterProScan predictions
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Type GO Term Name Evidence Source
BP GO:0010024 phytochromobilin biosynthetic process IEP Predicted GO
MF GO:0016627 oxidoreductase activity, acting on the CH-CH group of donors IEP Predicted GO
MF GO:0016636 oxidoreductase activity, acting on the CH-CH group of donors, iron-sulfur protein as acceptor IEP Predicted GO
BP GO:0033013 tetrapyrrole metabolic process IEP Predicted GO
BP GO:0033014 tetrapyrrole biosynthetic process IEP Predicted GO
MF GO:0050897 cobalt ion binding IEP Predicted GO
BP GO:0051202 phytochromobilin metabolic process IEP Predicted GO
InterPro domains Description Start Stop
IPR004332 Transposase_MuDR 89 153
IPR018289 MULE_transposase_dom 263 325
IPR007527 Znf_SWIM 407 433
No external refs found!