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  5. LOC_Os01g41120

LOC_Os01g41120


Description : retrotransposon protein, putative, Ty3-gypsy subclass, expressed


Gene families : OG_42_0000323 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000323_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Oryza release: LOC_Os01g41120
Cluster HCCA clusters: cluster_0058

Target Alias Description ECC score Gene Family Method Actions
At2g15880 No alias Pollen-specific leucine-rich repeat extensin-like... 0.03 Orthogroups_2024-Update
Brara.K00970.1 No alias LRR-domain extensin 0.02 Orthogroups_2024-Update
GRMZM2G099491 No alias Leucine-rich repeat (LRR) family protein 0.03 Orthogroups_2024-Update
HORVU5Hr1G105060.2 No alias LRR-domain extensin 0.02 Orthogroups_2024-Update
HORVU6Hr1G016710.2 No alias LRR-domain extensin 0.03 Orthogroups_2024-Update
MA_100985g0010 No alias (at4g13340 : 496.0) Leucine-rich repeat (LRR) family... 0.02 Orthogroups_2024-Update
PSME_00055770-RA No alias (at3g24480 : 504.0) Leucine-rich repeat (LRR) family... 0.02 Orthogroups_2024-Update
Potri.004G146400 No alias Leucine-rich repeat (LRR) family protein 0.03 Orthogroups_2024-Update
Potri.018G151000 No alias leucine-rich repeat/extensin 2 0.02 Orthogroups_2024-Update
Seita.1G092900.1 No alias LRR-domain extensin 0.02 Orthogroups_2024-Update
Sobic.002G050900.2 No alias LRR-domain extensin 0.05 Orthogroups_2024-Update
Sobic.003G205600.1 No alias LRR-domain extensin 0.01 Orthogroups_2024-Update
Sopen12g002930 No alias Leucine Rich Repeat 0.03 Orthogroups_2024-Update
Sopen12g002940 No alias Leucine Rich Repeat 0.02 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0005515 protein binding IEA InterProScan predictions
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Type GO Term Name Evidence Source
MF GO:0003700 DNA-binding transcription factor activity IEP Predicted GO
BP GO:0006284 base-excision repair IEP Predicted GO
BP GO:0006355 regulation of transcription, DNA-templated IEP Predicted GO
BP GO:0009889 regulation of biosynthetic process IEP Predicted GO
BP GO:0010468 regulation of gene expression IEP Predicted GO
BP GO:0010556 regulation of macromolecule biosynthetic process IEP Predicted GO
BP GO:0016192 vesicle-mediated transport IEP Predicted GO
BP GO:0019219 regulation of nucleobase-containing compound metabolic process IEP Predicted GO
BP GO:0019222 regulation of metabolic process IEP Predicted GO
BP GO:0031323 regulation of cellular metabolic process IEP Predicted GO
BP GO:0031326 regulation of cellular biosynthetic process IEP Predicted GO
BP GO:0050789 regulation of biological process IEP Predicted GO
BP GO:0050794 regulation of cellular process IEP Predicted GO
BP GO:0051171 regulation of nitrogen compound metabolic process IEP Predicted GO
BP GO:0051252 regulation of RNA metabolic process IEP Predicted GO
BP GO:0051259 protein complex oligomerization IEP Predicted GO
BP GO:0051260 protein homooligomerization IEP Predicted GO
BP GO:0060255 regulation of macromolecule metabolic process IEP Predicted GO
BP GO:0065007 biological regulation IEP Predicted GO
BP GO:0080090 regulation of primary metabolic process IEP Predicted GO
MF GO:0140110 transcription regulator activity IEP Predicted GO
BP GO:1903506 regulation of nucleic acid-templated transcription IEP Predicted GO
BP GO:2000112 regulation of cellular macromolecule biosynthetic process IEP Predicted GO
BP GO:2001141 regulation of RNA biosynthetic process IEP Predicted GO
InterPro domains Description Start Stop
IPR001611 Leu-rich_rpt 144 202
IPR001611 Leu-rich_rpt 286 343
No external refs found!