LOC_Os01g42350

Description : pleiotropic drug resistance protein, putative, expressed

Gene families : OG_42_0000055 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000055_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	Oryza release: LOC_Os01g42350
Cluster	HCCA clusters: cluster_0138

Target	Alias	Description	ECC score	Gene Family Method
Bradi2g10110	No alias	pleiotropic drug resistance 12	0.03	Orthogroups_2024-Update
Glyma.17G206300	No alias	pleiotropic drug resistance 12	0.02	Orthogroups_2024-Update
HORVU5Hr1G106850.1	No alias	subfamily ABCG transporter	0.03	Orthogroups_2024-Update
LOC_Os09g16290	No alias	ABC-2 type transporter, putative, expressed	0.03	Orthogroups_2024-Update
LOC_Os12g32820	No alias	pleiotropic drug resistance protein 3, putative, expressed	0.02	Orthogroups_2024-Update
Potri.003G049600	No alias	ABC-2 and Plant PDR ABC-type transporter family protein	0.04	Orthogroups_2024-Update
Potri.006G248500	No alias	pleiotropic drug resistance 12	0.02	Orthogroups_2024-Update
Seita.4G210500.1	No alias	subfamily ABCG transporter	0.03	Orthogroups_2024-Update
Sobic.003G216300.1	No alias	subfamily ABCG transporter	0.03	Orthogroups_2024-Update
Sopen01g044530	No alias	ABC-2 type transporter	0.03	Orthogroups_2024-Update

Type	GO Term	Name	Evidence	Source
MF	GO:0000166	nucleotide binding	None	Extended
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003824	catalytic activity	None	Extended
MF	GO:0005488	binding	None	Extended
MF	GO:0005524	ATP binding	IEA	InterProScan predictions
CC	GO:0005575	cellular_component	None	Extended
MF	GO:0008144	drug binding	None	Extended
CC	GO:0016020	membrane	IEA	InterProScan predictions
MF	GO:0016462	pyrophosphatase activity	None	Extended
MF	GO:0016787	hydrolase activity	None	Extended
MF	GO:0016817	hydrolase activity, acting on acid anhydrides	None	Extended
MF	GO:0016818	hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides	None	Extended
MF	GO:0016887	ATPase activity	IEA	InterProScan predictions
MF	GO:0017076	purine nucleotide binding	None	Extended
MF	GO:0017111	nucleoside-triphosphatase activity	None	Extended
MF	GO:0030554	adenyl nucleotide binding	None	Extended
MF	GO:0032553	ribonucleotide binding	None	Extended
MF	GO:0032555	purine ribonucleotide binding	None	Extended
MF	GO:0032559	adenyl ribonucleotide binding	None	Extended
MF	GO:0035639	purine ribonucleoside triphosphate binding	None	Extended
MF	GO:0036094	small molecule binding	None	Extended
MF	GO:0043167	ion binding	None	Extended
MF	GO:0043168	anion binding	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
MF	GO:0097367	carbohydrate derivative binding	None	Extended
MF	GO:1901265	nucleoside phosphate binding	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended

Type	GO Term	Name	Evidence	Source
MF	GO:0004003	ATP-dependent DNA helicase activity	IEP	Predicted GO
CC	GO:0005667	transcription factor complex	IEP	Predicted GO
CC	GO:0005669	transcription factor TFIID complex	IEP	Predicted GO
BP	GO:0006352	DNA-templated transcription, initiation	IEP	Predicted GO
BP	GO:0006367	transcription initiation from RNA polymerase II promoter	IEP	Predicted GO
MF	GO:0008026	ATP-dependent helicase activity	IEP	Predicted GO
MF	GO:0008094	DNA-dependent ATPase activity	IEP	Predicted GO
MF	GO:0043531	ADP binding	IEP	Predicted GO
CC	GO:0044798	nuclear transcription factor complex	IEP	Predicted GO
MF	GO:0070035	purine NTP-dependent helicase activity	IEP	Predicted GO
CC	GO:0090575	RNA polymerase II transcription factor complex	IEP	Predicted GO

InterPro domains	Description	Start	Stop
IPR013581	PDR_assoc	746	811
IPR003439	ABC_transporter-like	194	375
IPR003439	ABC_transporter-like	899	1051
IPR013525	ABC_2_trans	1197	1421
IPR013525	ABC_2_trans	529	741
IPR029481	ABC_trans_N	118	168

External Links

No external refs found!