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  5. LOC_Os01g43420

LOC_Os01g43420


Description : expressed protein


Gene families : OG_42_0001934 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0001934_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Oryza release: LOC_Os01g43420
Cluster HCCA clusters: cluster_0033

Target Alias Description ECC score Gene Family Method Actions
Brara.E00153.1 No alias component *(ABIL) of SCAR/WAVE ARP2/3-activating complex 0.03 Orthogroups_2024-Update
Brara.G01544.1 No alias component *(ABIL) of SCAR/WAVE ARP2/3-activating complex 0.02 Orthogroups_2024-Update
Glyma.19G251600 No alias ABI-1-like 1 0.01 Orthogroups_2024-Update
Seita.5G231600.1 No alias component *(ABIL) of SCAR/WAVE ARP2/3-activating complex 0.03 Orthogroups_2024-Update
Sobic.003G186132.1 No alias component *(ABIL) of SCAR/WAVE ARP2/3-activating complex 0.01 Orthogroups_2024-Update

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
CC GO:0000439 transcription factor TFIIH core complex IEP Predicted GO
MF GO:0005096 GTPase activator activity IEP Predicted GO
CC GO:0005667 transcription factor complex IEP Predicted GO
CC GO:0005795 Golgi stack IEP Predicted GO
BP GO:0006289 nucleotide-excision repair IEP Predicted GO
MF GO:0008194 UDP-glycosyltransferase activity IEP Predicted GO
MF GO:0008375 acetylglucosaminyltransferase activity IEP Predicted GO
MF GO:0008455 alpha-1,6-mannosylglycoprotein 2-beta-N-acetylglucosaminyltransferase activity IEP Predicted GO
CC GO:0016021 integral component of membrane IEP Predicted GO
BP GO:0016255 attachment of GPI anchor to protein IEP Predicted GO
CC GO:0031224 intrinsic component of membrane IEP Predicted GO
CC GO:0031984 organelle subcompartment IEP Predicted GO
CC GO:0042765 GPI-anchor transamidase complex IEP Predicted GO
CC GO:0044422 organelle part IEP Predicted GO
CC GO:0044425 membrane part IEP Predicted GO
CC GO:0044446 intracellular organelle part IEP Predicted GO
CC GO:0044798 nuclear transcription factor complex IEP Predicted GO
MF GO:0050664 oxidoreductase activity, acting on NAD(P)H, oxygen as acceptor IEP Predicted GO
CC GO:0090575 RNA polymerase II transcription factor complex IEP Predicted GO
CC GO:0098791 Golgi subcompartment IEP Predicted GO
MF GO:0140103 catalytic activity, acting on a glycoprotein IEP Predicted GO

No InterPro domains available for this sequence

No external refs found!