Solyc07g016200

Description : Proteasome subunit beta type (AHRD V3.3 *** K4CCD7_SOLLC)

Gene families : OG_42_0003705 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0003705_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	Solanum release: Solyc07g016200
Cluster	HCCA clusters: Cluster_185

Target	Alias	Description	ECC score	Gene Family Method
Brara.H01358.1	No alias	beta-type-1 component *(PBA) of 26S proteasome	0.04	Orthogroups_2024-Update
Cre06.g279000	No alias	N-terminal nucleophile aminohydrolases (Ntn hydrolases)...	0.01	Orthogroups_2024-Update
Cre12.g531100	No alias	N-terminal nucleophile aminohydrolases (Ntn hydrolases)...	0.01	Orthogroups_2024-Update
Kfl00028_0160	kfl00028_0160_v1.1	(at4g31300 : 267.0) Encodes 20S proteasome subunit PBA1...	0.02	Orthogroups_2024-Update
LOC_Os06g04800	No alias	peptidase, T1 family, putative, expressed	0.02	Orthogroups_2024-Update
Seita.9G066900.1	No alias	beta-type-1 component *(PBA) of 26S proteasome	0.03	Orthogroups_2024-Update
Sopen07g005910	No alias	Proteasome subunit	0.04	Orthogroups_2024-Update
evm.model.tig00001098.5	No alias	(at4g31300 : 209.0) Encodes 20S proteasome subunit PBA1...	0.02	Orthogroups_2024-Update

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003824	catalytic activity	None	Extended
MF	GO:0004175	endopeptidase activity	None	Extended
MF	GO:0004298	threonine-type endopeptidase activity	IEA	InterProScan predictions
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005839	proteasome core complex	IEA	InterProScan predictions
BP	GO:0006508	proteolysis	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
MF	GO:0008233	peptidase activity	None	Extended
MF	GO:0016787	hydrolase activity	None	Extended
BP	GO:0019538	protein metabolic process	None	Extended
CC	GO:0032991	protein-containing complex	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
CC	GO:0044424	intracellular part	None	Extended
CC	GO:0044464	cell part	None	Extended
BP	GO:0051603	proteolysis involved in cellular protein catabolic process	IEA	InterProScan predictions
MF	GO:0070003	threonine-type peptidase activity	None	Extended
MF	GO:0070011	peptidase activity, acting on L-amino acid peptides	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
MF	GO:0140096	catalytic activity, acting on a protein	None	Extended
BP	GO:1901564	organonitrogen compound metabolic process	None	Extended

Type	GO Term	Name	Evidence	Source
MF	GO:0003723	RNA binding	IEP	Predicted GO
MF	GO:0003995	acyl-CoA dehydrogenase activity	IEP	Predicted GO
MF	GO:0008092	cytoskeletal protein binding	IEP	Predicted GO
MF	GO:0008641	ubiquitin-like modifier activating enzyme activity	IEP	Predicted GO
BP	GO:0016458	gene silencing	IEP	Predicted GO
MF	GO:0016874	ligase activity	IEP	Predicted GO
MF	GO:0016877	ligase activity, forming carbon-sulfur bonds	IEP	Predicted GO
MF	GO:0016892	endoribonuclease activity, producing 3'-phosphomonoesters	IEP	Predicted GO
MF	GO:0016894	endonuclease activity, active with either ribo- or deoxyribonucleic acids and producing 3'-phosphomonoesters	IEP	Predicted GO
CC	GO:0019773	proteasome core complex, alpha-subunit complex	IEP	Predicted GO
BP	GO:0031047	gene silencing by RNA	IEP	Predicted GO
MF	GO:0033897	ribonuclease T2 activity	IEP	Predicted GO

InterPro domains	Description	Start	Stop
IPR001353	Proteasome_sua/b	14	191

External Links

No external refs found!