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LOC_Os01g49180


Description : ATP dependent DNA ligase family protein, putative, expressed


Gene families : OG_42_0002339 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0002339_tree

Sequence : coding (download), protein (download)


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Type Description Actions
Neighborhood Oryza release: LOC_Os01g49180
Cluster HCCA clusters: cluster_0121

Target Alias Description ECC score Gene Family Method Actions
A4A49_65631 No alias dna ligase 6 0.02 Orthogroups_2024-Update
Bradi2g46780 No alias DNA LIGASE 6 0.04 Orthogroups_2024-Update
GRMZM2G083629 No alias DNA LIGASE 6 0.03 Orthogroups_2024-Update
Potri.004G094300 No alias DNA LIGASE 6 0.03 Orthogroups_2024-Update
Seita.9G212100.1 No alias DNA ligase *(LIG1) & DNA replication DNA ligase *(LIG1)... 0.02 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0003677 DNA binding IEA InterProScan predictions
MF GO:0003910 DNA ligase (ATP) activity IEA InterProScan predictions
MF GO:0005524 ATP binding IEA InterProScan predictions
BP GO:0006281 DNA repair IEA InterProScan predictions
BP GO:0006310 DNA recombination IEA InterProScan predictions
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Type GO Term Name Evidence Source
MF GO:0003899 DNA-directed 5'-3' RNA polymerase activity IEP Predicted GO
MF GO:0004674 protein serine/threonine kinase activity IEP Predicted GO
BP GO:0006351 transcription, DNA-templated IEP Predicted GO
MF GO:0034062 5'-3' RNA polymerase activity IEP Predicted GO
BP GO:0097659 nucleic acid-templated transcription IEP Predicted GO
MF GO:0097747 RNA polymerase activity IEP Predicted GO
InterPro domains Description Start Stop
IPR012310 DNA_ligase_ATP-dep_cent 1004 1223
IPR011084 DRMBL 277 379
IPR012309 DNA_ligase_ATP-dep_C 1354 1422
IPR012308 DNA_ligase_ATP-dep_N 772 934
No external refs found!