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  5. LOC_Os01g49290

LOC_Os01g49290


Description : WD repeat-containing protein, putative, expressed


Gene families : OG_42_0002129 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0002129_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Oryza release: LOC_Os01g49290
Cluster HCCA clusters: cluster_0084

Target Alias Description ECC score Gene Family Method Actions
266532 No alias receptor for activated C kinase 1B 0.04 Orthogroups_2024-Update
At1g18080 No alias RACK1A_AT [Source:UniProtKB/TrEMBL;Acc:A0A178WHX3] 0.03 Orthogroups_2024-Update
At3g18130 No alias Receptor for activated C kinase 1C... 0.02 Orthogroups_2024-Update
Bradi2g17350 No alias Transducin/WD40 repeat-like superfamily protein 0.02 Orthogroups_2024-Update
Bradi2g46840 No alias Transducin/WD40 repeat-like superfamily protein 0.05 Orthogroups_2024-Update
Brara.A02955.1 No alias component *(RACK1) of small ribosomal-subunit (SSU) proteome 0.07 Orthogroups_2024-Update
Brara.E02380.1 No alias component *(RACK1) of small ribosomal-subunit (SSU) proteome 0.05 Orthogroups_2024-Update
Brara.F01274.1 No alias component *(RACK1) of small ribosomal-subunit (SSU) proteome 0.04 Orthogroups_2024-Update
Brara.H02438.1 No alias component *(RACK1) of small ribosomal-subunit (SSU) proteome 0.1 Orthogroups_2024-Update
Brara.I04799.1 No alias component *(RACK1) of small ribosomal-subunit (SSU) proteome 0.05 Orthogroups_2024-Update
Glyma.08G051600 No alias receptor for activated C kinase 1C 0.03 Orthogroups_2024-Update
HORVU1Hr1G083710.2 No alias component *(RACK1) of small ribosomal-subunit (SSU) proteome 0.03 Orthogroups_2024-Update
HORVU3Hr1G063670.2 No alias component *(RACK1) of small ribosomal-subunit (SSU) proteome 0.03 Orthogroups_2024-Update
Mp3g15630.1 No alias associated component RACK1 of SSU proteome 0.02 Orthogroups_2024-Update
Potri.015G041600 No alias Transducin/WD40 repeat-like superfamily protein 0.04 Orthogroups_2024-Update
Seita.3G155500.1 No alias component *(RACK1) of small ribosomal-subunit (SSU) proteome 0.02 Orthogroups_2024-Update
Seita.5G275300.1 No alias component *(RACK1) of small ribosomal-subunit (SSU) proteome 0.03 Orthogroups_2024-Update
Sobic.003G261100.1 No alias component *(RACK1) of small ribosomal-subunit (SSU) proteome 0.04 Orthogroups_2024-Update
Sobic.009G223300.1 No alias component *(RACK1) of small ribosomal-subunit (SSU) proteome 0.06 Orthogroups_2024-Update
Solyc03g119040 No alias LeArcA2 protein containing 7 WD40 repeats 0.07 Orthogroups_2024-Update
Solyc06g069010 No alias LeArcA1 protein 0.04 Orthogroups_2024-Update
Sopen03g037930 No alias WD domain, G-beta repeat 0.04 Orthogroups_2024-Update
Sopen06g026300 No alias WD domain, G-beta repeat 0.06 Orthogroups_2024-Update
Sopen12g020110 No alias WD domain, G-beta repeat 0.02 Orthogroups_2024-Update
evm.model.contig_2334.1 No alias (p25387|gblp_chlre : 464.0) Guanine nucleotide-binding... 0.06 Orthogroups_2024-Update
evm.model.tig00000169.6 No alias (p25387|gblp_chlre : 478.0) Guanine nucleotide-binding... 0.01 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0005515 protein binding IEA InterProScan predictions
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Type GO Term Name Evidence Source
BP GO:0000045 autophagosome assembly IEP Predicted GO
CC GO:0000313 organellar ribosome IEP Predicted GO
MF GO:0003697 single-stranded DNA binding IEP Predicted GO
MF GO:0003723 RNA binding IEP Predicted GO
MF GO:0003735 structural constituent of ribosome IEP Predicted GO
MF GO:0004576 oligosaccharyl transferase activity IEP Predicted GO
MF GO:0004579 dolichyl-diphosphooligosaccharide-protein glycotransferase activity IEP Predicted GO
MF GO:0005198 structural molecule activity IEP Predicted GO
CC GO:0005575 cellular_component IEP Predicted GO
CC GO:0005622 intracellular IEP Predicted GO
CC GO:0005741 mitochondrial outer membrane IEP Predicted GO
CC GO:0005761 mitochondrial ribosome IEP Predicted GO
CC GO:0005783 endoplasmic reticulum IEP Predicted GO
CC GO:0005840 ribosome IEP Predicted GO
BP GO:0006338 chromatin remodeling IEP Predicted GO
BP GO:0006412 translation IEP Predicted GO
BP GO:0006518 peptide metabolic process IEP Predicted GO
BP GO:0006888 ER to Golgi vesicle-mediated transport IEP Predicted GO
BP GO:0007033 vacuole organization IEP Predicted GO
CC GO:0008250 oligosaccharyltransferase complex IEP Predicted GO
BP GO:0009058 biosynthetic process IEP Predicted GO
BP GO:0009059 macromolecule biosynthetic process IEP Predicted GO
BP GO:0009767 photosynthetic electron transport chain IEP Predicted GO
BP GO:0009987 cellular process IEP Predicted GO
BP GO:0019538 protein metabolic process IEP Predicted GO
BP GO:0019725 cellular homeostasis IEP Predicted GO
CC GO:0019867 outer membrane IEP Predicted GO
CC GO:0030127 COPII vesicle coat IEP Predicted GO
CC GO:0031968 organelle outer membrane IEP Predicted GO
CC GO:0032991 protein-containing complex IEP Predicted GO
BP GO:0034641 cellular nitrogen compound metabolic process IEP Predicted GO
BP GO:0034645 cellular macromolecule biosynthetic process IEP Predicted GO
BP GO:0034728 nucleosome organization IEP Predicted GO
BP GO:0043043 peptide biosynthetic process IEP Predicted GO
BP GO:0043044 ATP-dependent chromatin remodeling IEP Predicted GO
CC GO:0043226 organelle IEP Predicted GO
CC GO:0043228 non-membrane-bounded organelle IEP Predicted GO
CC GO:0043229 intracellular organelle IEP Predicted GO
CC GO:0043232 intracellular non-membrane-bounded organelle IEP Predicted GO
BP GO:0043486 histone exchange IEP Predicted GO
BP GO:0043603 cellular amide metabolic process IEP Predicted GO
BP GO:0043604 amide biosynthetic process IEP Predicted GO
BP GO:0044249 cellular biosynthetic process IEP Predicted GO
BP GO:0044267 cellular protein metabolic process IEP Predicted GO
BP GO:0044271 cellular nitrogen compound biosynthetic process IEP Predicted GO
CC GO:0044422 organelle part IEP Predicted GO
CC GO:0044424 intracellular part IEP Predicted GO
CC GO:0044429 mitochondrial part IEP Predicted GO
CC GO:0044444 cytoplasmic part IEP Predicted GO
CC GO:0044446 intracellular organelle part IEP Predicted GO
CC GO:0044464 cell part IEP Predicted GO
BP GO:0045454 cell redox homeostasis IEP Predicted GO
BP GO:0070925 organelle assembly IEP Predicted GO
BP GO:0071824 protein-DNA complex subunit organization IEP Predicted GO
CC GO:0098588 bounding membrane of organelle IEP Predicted GO
CC GO:0098798 mitochondrial protein complex IEP Predicted GO
CC GO:0098805 whole membrane IEP Predicted GO
BP GO:1901564 organonitrogen compound metabolic process IEP Predicted GO
BP GO:1901566 organonitrogen compound biosynthetic process IEP Predicted GO
BP GO:1901576 organic substance biosynthetic process IEP Predicted GO
BP GO:1905037 autophagosome organization IEP Predicted GO
CC GO:1990904 ribonucleoprotein complex IEP Predicted GO
InterPro domains Description Start Stop
IPR001680 WD40_repeat 13 47
IPR001680 WD40_repeat 109 145
IPR001680 WD40_repeat 67 103
IPR001680 WD40_repeat 302 325
IPR001680 WD40_repeat 162 195
IPR001680 WD40_repeat 250 277
IPR001680 WD40_repeat 204 237
No external refs found!