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  5. LOC_Os01g50100

LOC_Os01g50100


Description : ABC transporter, ATP-binding protein, putative, expressed


Gene families : OG_42_0000040 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000040_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Oryza release: LOC_Os01g50100
Cluster HCCA clusters: cluster_0051

Target Alias Description ECC score Gene Family Method Actions
123915 No alias P-glycoprotein 11 0.02 Orthogroups_2024-Update
233433 No alias ABC transporter family protein 0.02 Orthogroups_2024-Update
A4A49_01823 No alias putative abc transporter b family member 8 0.02 Orthogroups_2024-Update
At2g36910 No alias ABC transporter B family member 1... 0.02 Orthogroups_2024-Update
Brara.F03152.1 No alias subfamily ABCB transporter 0.03 Orthogroups_2024-Update
Brara.K00467.1 No alias subfamily ABCB transporter 0.03 Orthogroups_2024-Update
GRMZM2G146034 No alias ABC transporter family protein 0.05 Orthogroups_2024-Update
PSME_00016535-RA No alias (at3g28860 : 1775.0) Belongs to the family of... 0.02 Orthogroups_2024-Update
PSME_00016714-RA No alias (q6yuu5|mdr_orysa : 1107.0) Putative multidrug... 0.02 Orthogroups_2024-Update
Sobic.007G163800.1 No alias subfamily ABCB transporter 0.03 Orthogroups_2024-Update
Solyc07g018130 No alias ABC transporter B family protein (AHRD V3.3 *** G7JF16_MEDTR) 0.02 Orthogroups_2024-Update
Sopen04g005490 No alias ABC transporter transmembrane region 0.04 Orthogroups_2024-Update
Sopen06g004020 No alias ABC transporter transmembrane region 0.02 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0005524 ATP binding IEA InterProScan predictions
CC GO:0016021 integral component of membrane IEA InterProScan predictions
MF GO:0016887 ATPase activity IEA InterProScan predictions
MF GO:0042626 ATPase activity, coupled to transmembrane movement of substances IEA InterProScan predictions
BP GO:0055085 transmembrane transport IEA InterProScan predictions
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Type GO Term Name Evidence Source
BP GO:0000271 polysaccharide biosynthetic process IEP Predicted GO
MF GO:0004298 threonine-type endopeptidase activity IEP Predicted GO
MF GO:0004866 endopeptidase inhibitor activity IEP Predicted GO
MF GO:0004867 serine-type endopeptidase inhibitor activity IEP Predicted GO
CC GO:0005576 extracellular region IEP Predicted GO
CC GO:0005839 proteasome core complex IEP Predicted GO
BP GO:0009250 glucan biosynthetic process IEP Predicted GO
MF GO:0016702 oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen IEP Predicted GO
MF GO:0016757 transferase activity, transferring glycosyl groups IEP Predicted GO
MF GO:0016758 transferase activity, transferring hexosyl groups IEP Predicted GO
MF GO:0016759 cellulose synthase activity IEP Predicted GO
MF GO:0016760 cellulose synthase (UDP-forming) activity IEP Predicted GO
BP GO:0030243 cellulose metabolic process IEP Predicted GO
BP GO:0030244 cellulose biosynthetic process IEP Predicted GO
MF GO:0030414 peptidase inhibitor activity IEP Predicted GO
BP GO:0033692 cellular polysaccharide biosynthetic process IEP Predicted GO
MF GO:0051213 dioxygenase activity IEP Predicted GO
BP GO:0051273 beta-glucan metabolic process IEP Predicted GO
BP GO:0051274 beta-glucan biosynthetic process IEP Predicted GO
MF GO:0061134 peptidase regulator activity IEP Predicted GO
MF GO:0061135 endopeptidase regulator activity IEP Predicted GO
MF GO:0070003 threonine-type peptidase activity IEP Predicted GO
InterPro domains Description Start Stop
IPR003439 ABC_transporter-like 389 538
IPR011527 ABC1_TM_dom 678 888
IPR011527 ABC1_TM_dom 49 321
IPR003439 ABC_transporter-like 958 1106
No external refs found!