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  5. LOC_Os01g51810

LOC_Os01g51810


Description : pentatricopeptide, putative, expressed


Gene families : OG_42_0000001 (Orthogroups_2024-Update) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Oryza release: LOC_Os01g51810
Cluster HCCA clusters: cluster_0093

Target Alias Description ECC score Gene Family Method Actions
94907 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.02 Orthogroups_2024-Update
Bradi2g58450 No alias Pentatricopeptide repeat (PPR-like) superfamily protein 0.03 Orthogroups_2024-Update
GRMZM2G001466 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.02 Orthogroups_2024-Update
HORVU5Hr1G040610.4 No alias Unknown function 0.03 Orthogroups_2024-Update
MA_381817g0020 No alias (at2g22070 : 544.0) pentatricopeptide (PPR)... 0.02 Orthogroups_2024-Update
Potri.002G027800 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.02 Orthogroups_2024-Update
Seita.3G244200.1 No alias Unknown function 0.03 Orthogroups_2024-Update
Sobic.001G440300.1 No alias Unknown function 0.03 Orthogroups_2024-Update
Sobic.003G239000.1 No alias RNA editing factor *(MEF1) 0.02 Orthogroups_2024-Update
Solyc02g070710 No alias Pentatricopeptide repeat-containing family protein (AHRD... 0.03 Orthogroups_2024-Update

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0003916 DNA topoisomerase activity IEP Predicted GO
BP GO:0006265 DNA topological change IEP Predicted GO
MF GO:0016717 oxidoreductase activity, acting on paired donors, with oxidation of a pair of donors resulting in the reduction of molecular oxygen to two molecules of water IEP Predicted GO
BP GO:0071103 DNA conformation change IEP Predicted GO
InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 356 380
IPR002885 Pentatricopeptide_repeat 155 180
IPR002885 Pentatricopeptide_repeat 124 147
IPR002885 Pentatricopeptide_repeat 460 481
IPR002885 Pentatricopeptide_repeat 281 328
IPR002885 Pentatricopeptide_repeat 182 229
IPR002885 Pentatricopeptide_repeat 383 428
No external refs found!