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  5. LOC_Os01g53500

LOC_Os01g53500


Description : RING-H2 finger protein ATL2M, putative, expressed


Gene families : OG_42_0000003 (Orthogroups_2024-Update) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Oryza release: LOC_Os01g53500
Cluster HCCA clusters: cluster_0113

Target Alias Description ECC score Gene Family Method Actions
59303 No alias RING/U-box superfamily protein 0.02 Orthogroups_2024-Update
A4A49_18116 No alias ring-h2 finger protein atl78 0.03 Orthogroups_2024-Update
A4A49_21361 No alias ring-h2 finger protein atl78 0.02 Orthogroups_2024-Update
A4A49_36505 No alias e3 ubiquitin-protein ligase atl6 0.03 Orthogroups_2024-Update
A4A49_36993 No alias ring-h2 finger protein atl52 0.03 Orthogroups_2024-Update
At2g35000 No alias E3 ubiquitin-protein ligase ATL9... 0.04 Orthogroups_2024-Update
Bradi1g06330 No alias RING/U-box superfamily protein 0.03 Orthogroups_2024-Update
Bradi2g49152 No alias RING/U-box superfamily protein 0.03 Orthogroups_2024-Update
Bradi5g19490 No alias RING-H2 finger A3A 0.04 Orthogroups_2024-Update
Brara.A03044.1 No alias RING-H2-class ATL-subclass E3 ubiquitin ligase 0.03 Orthogroups_2024-Update
Brara.B02534.1 No alias RING-H2-class ATL-subclass E3 ubiquitin ligase 0.03 Orthogroups_2024-Update
Brara.E02317.1 No alias regulatory ubiquitin-protein ligase *(PRU2) &... 0.02 Orthogroups_2024-Update
Brara.E02318.1 No alias RING-H2-class ATL-subclass E3 ubiquitin ligase 0.02 Orthogroups_2024-Update
Brara.F01484.1 No alias RING-H2-class ATL-subclass E3 ubiquitin ligase 0.03 Orthogroups_2024-Update
Brara.J02673.1 No alias RING-H2-class ATL-subclass E3 ubiquitin ligase 0.02 Orthogroups_2024-Update
Brara.K00768.1 No alias RING-H2-class ATL-subclass E3 ubiquitin ligase 0.02 Orthogroups_2024-Update
GRMZM2G146847 No alias RING/U-box superfamily protein 0.03 Orthogroups_2024-Update
GRMZM2G386584 No alias RING/U-box superfamily protein 0.02 Orthogroups_2024-Update
GRMZM2G460958 No alias RING/U-box superfamily protein 0.02 Orthogroups_2024-Update
GRMZM2G480106 No alias RING/U-box superfamily protein 0.02 Orthogroups_2024-Update
Glyma.03G203400 No alias RING/U-box superfamily protein 0.02 Orthogroups_2024-Update
Glyma.09G067900 No alias RING/U-box superfamily protein 0.03 Orthogroups_2024-Update
Glyma.11G087600 No alias RING/U-box superfamily protein 0.02 Orthogroups_2024-Update
Glyma.12G208600 No alias RING/U-box superfamily protein 0.02 Orthogroups_2024-Update
Glyma.14G178400 No alias RING/U-box superfamily protein 0.04 Orthogroups_2024-Update
HORVU0Hr1G016510.1 No alias RING-H2-class ATL-subclass E3 ubiquitin ligase 0.04 Orthogroups_2024-Update
HORVU1Hr1G074230.1 No alias Unknown function 0.02 Orthogroups_2024-Update
HORVU2Hr1G105980.2 No alias Unknown function 0.03 Orthogroups_2024-Update
HORVU3Hr1G069960.1 No alias Unknown function 0.03 Orthogroups_2024-Update
HORVU5Hr1G007760.1 No alias Unknown function 0.03 Orthogroups_2024-Update
HORVU6Hr1G009820.3 No alias RING-H2-class ATL-subclass E3 ubiquitin ligase 0.03 Orthogroups_2024-Update
HORVU6Hr1G077610.1 No alias RING-H2-class ATL-subclass E3 ubiquitin ligase 0.03 Orthogroups_2024-Update
HORVU7Hr1G042940.1 No alias Unknown function 0.02 Orthogroups_2024-Update
LOC_Os08g37760 No alias zinc finger, C3HC4 type domain containing protein, expressed 0.02 Orthogroups_2024-Update
MA_308999g0010 No alias (at1g72310 : 80.9) Encodes a putative RING-H2 zinc... 0.02 Orthogroups_2024-Update
MA_31462g0010 No alias (at1g49220 : 101.0) RING/U-box superfamily protein;... 0.03 Orthogroups_2024-Update
MA_3380g0010 No alias (at1g49230 : 140.0) RING/U-box superfamily protein;... 0.03 Orthogroups_2024-Update
MA_37930g0010 No alias no hits & (original description: no original description) 0.02 Orthogroups_2024-Update
MA_38494g0010 No alias (at1g49230 : 119.0) RING/U-box superfamily protein;... 0.03 Orthogroups_2024-Update
MA_479316g0010 No alias (at3g16720 : 91.3) RING-H2 protein induced after... 0.02 Orthogroups_2024-Update
MA_5319g0010 No alias (at1g49230 : 120.0) RING/U-box superfamily protein;... 0.02 Orthogroups_2024-Update
MA_904294g0010 No alias (at1g72310 : 107.0) Encodes a putative RING-H2 zinc... 0.03 Orthogroups_2024-Update
PSME_00003022-RA No alias (at1g72200 : 164.0) RING/U-box superfamily protein;... 0.02 Orthogroups_2024-Update
PSME_00051307-RA No alias (at3g18773 : 100.0) RING/U-box superfamily protein;... 0.02 Orthogroups_2024-Update
PSME_00051567-RA No alias (at3g16720 : 108.0) RING-H2 protein induced after... 0.02 Orthogroups_2024-Update
Potri.001G279200 No alias TOXICOS EN LEVADURA 2 0.02 Orthogroups_2024-Update
Potri.003G093100 No alias RING/U-box superfamily protein 0.02 Orthogroups_2024-Update
Potri.008G018900 No alias RING/U-box superfamily protein 0.03 Orthogroups_2024-Update
Potri.010G243200 No alias RING/U-box superfamily protein 0.02 Orthogroups_2024-Update
Potri.019G091400 No alias RING/U-box superfamily protein 0.03 Orthogroups_2024-Update
Pp1s14_164V6 No alias zinc finger (c3hc4-type ring finger) family protein 0.01 Orthogroups_2024-Update
Pp1s71_162V6 No alias ring finger 0.03 Orthogroups_2024-Update
Pp1s85_173V6 No alias No description available 0.02 Orthogroups_2024-Update
Seita.1G197500.1 No alias RING-H2-class ATL-subclass E3 ubiquitin ligase 0.03 Orthogroups_2024-Update
Seita.2G390800.1 No alias Unknown function 0.03 Orthogroups_2024-Update
Seita.3G209600.1 No alias Unknown function 0.04 Orthogroups_2024-Update
Seita.6G186400.1 No alias RING-H2-class ATL-subclass E3 ubiquitin ligase 0.03 Orthogroups_2024-Update
Seita.7G118000.1 No alias RING-H2-class ATL-subclass E3 ubiquitin ligase 0.03 Orthogroups_2024-Update
Sobic.003G147301.1 No alias Unknown function 0.04 Orthogroups_2024-Update
Sobic.004G181300.1 No alias RING-H2-class ATL-subclass E3 ubiquitin ligase 0.03 Orthogroups_2024-Update
Sobic.004G187800.1 No alias RING-H2-class ATL-subclass E3 ubiquitin ligase 0.02 Orthogroups_2024-Update
Sobic.004G279000.1 No alias RING-H2-class ATL-subclass E3 ubiquitin ligase 0.02 Orthogroups_2024-Update
Sobic.009G209500.1 No alias RING-H2-class ATL-subclass E3 ubiquitin ligase 0.03 Orthogroups_2024-Update
Sobic.010G071000.1 No alias RING-H2-class ATL-subclass E3 ubiquitin ligase 0.03 Orthogroups_2024-Update
Solyc03g032060 No alias RING/U-box superfamily protein (AHRD V3.3 *** AT1G20823.1) 0.02 Orthogroups_2024-Update
Solyc06g051250 No alias LOW QUALITY:RING/U-box superfamily protein, putative... 0.02 Orthogroups_2024-Update
Solyc09g075320 No alias RING/U-box superfamily protein (AHRD V3.3 *** AT4G15975.1) 0.02 Orthogroups_2024-Update
Solyc10g081790 No alias RING/U-box superfamily protein (AHRD V3.3 *** AT5G06490.1) 0.02 Orthogroups_2024-Update
Solyc11g073170 No alias LOW QUALITY:RING/U-box superfamily protein, putative... 0.02 Orthogroups_2024-Update
Solyc12g087840 No alias RING/U-box superfamily protein, putative (AHRD V3.3 ***... 0.02 Orthogroups_2024-Update
Sopen01g051390 No alias Ring finger domain 0.03 Orthogroups_2024-Update
Sopen07g002500 No alias Ring finger domain 0.02 Orthogroups_2024-Update
evm.model.contig_2102.17 No alias no hits & (original description: no original description) 0.01 Orthogroups_2024-Update
evm.model.tig00001128.32 No alias no hits & (original description: no original description) 0.01 Orthogroups_2024-Update

Type GO Term Name Evidence Source

No GO annotation available for this sequence
Toggle parental
Type GO Term Name Evidence Source
BP GO:0006352 DNA-templated transcription, initiation IEP Predicted GO
BP GO:0006367 transcription initiation from RNA polymerase II promoter IEP Predicted GO
MF GO:0016757 transferase activity, transferring glycosyl groups IEP Predicted GO
MF GO:0016758 transferase activity, transferring hexosyl groups IEP Predicted GO
BP GO:0030258 lipid modification IEP Predicted GO
BP GO:0030259 lipid glycosylation IEP Predicted GO
BP GO:0031123 RNA 3'-end processing IEP Predicted GO
BP GO:0031124 mRNA 3'-end processing IEP Predicted GO
MF GO:0051011 microtubule minus-end binding IEP Predicted GO
BP GO:0070085 glycosylation IEP Predicted GO
InterPro domains Description Start Stop
IPR001841 Znf_RING 121 164
No external refs found!