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  5. Solyc07g018070

Solyc07g018070


Description : Double Clp-N motif-containing P-loop nucleoside triphosphate hydrolases superfamily protein, putative (AHRD V3.3 *** A0A061GSB6_THECC)


Gene families : OG_42_0000981 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000981_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Solanum release: Solyc07g018070
Cluster HCCA clusters: Cluster_132

Target Alias Description ECC score Gene Family Method Actions
A4A49_07765 No alias protein smax1-like 3 0.04 Orthogroups_2024-Update
A4A49_27780 No alias protein smax1-like 3 0.03 Orthogroups_2024-Update
Brara.I03560.1 No alias strigolactone signal modulator *(SMXL) 0.04 Orthogroups_2024-Update
Glyma.20G193900 No alias Double Clp-N motif-containing P-loop nucleoside... 0.03 Orthogroups_2024-Update
MA_15290g0010 No alias (at3g52490 : 251.0) Double Clp-N motif-containing P-loop... 0.03 Orthogroups_2024-Update
Potri.016G071800 No alias Double Clp-N motif-containing P-loop nucleoside... 0.03 Orthogroups_2024-Update
Sobic.006G074900.1 No alias strigolactone signal modulator *(SMXL) 0.02 Orthogroups_2024-Update
Sopen07g006950 No alias Clp amino terminal domain 0.03 Orthogroups_2024-Update
Sopen10g032510 No alias Clp amino terminal domain 0.03 Orthogroups_2024-Update
Sopen11g002580 No alias Clp amino terminal domain 0.04 Orthogroups_2024-Update

Type GO Term Name Evidence Source
BP GO:0019538 protein metabolic process IEA InterProScan predictions
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Type GO Term Name Evidence Source
BP GO:0000390 spliceosomal complex disassembly IEP Predicted GO
MF GO:0003676 nucleic acid binding IEP Predicted GO
MF GO:0003774 motor activity IEP Predicted GO
MF GO:0003777 microtubule motor activity IEP Predicted GO
CC GO:0005634 nucleus IEP Predicted GO
CC GO:0005681 spliceosomal complex IEP Predicted GO
CC GO:0005684 U2-type spliceosomal complex IEP Predicted GO
BP GO:0006354 DNA-templated transcription, elongation IEP Predicted GO
BP GO:0006368 transcription elongation from RNA polymerase II promoter IEP Predicted GO
BP GO:0006928 movement of cell or subcellular component IEP Predicted GO
BP GO:0007017 microtubule-based process IEP Predicted GO
BP GO:0007018 microtubule-based movement IEP Predicted GO
MF GO:0008017 microtubule binding IEP Predicted GO
CC GO:0008023 transcription elongation factor complex IEP Predicted GO
MF GO:0008092 cytoskeletal protein binding IEP Predicted GO
MF GO:0015631 tubulin binding IEP Predicted GO
BP GO:0016458 gene silencing IEP Predicted GO
CC GO:0016593 Cdc73/Paf1 complex IEP Predicted GO
MF GO:0016846 carbon-sulfur lyase activity IEP Predicted GO
BP GO:0022411 cellular component disassembly IEP Predicted GO
BP GO:0031047 gene silencing by RNA IEP Predicted GO
BP GO:0032984 protein-containing complex disassembly IEP Predicted GO
BP GO:0032988 ribonucleoprotein complex disassembly IEP Predicted GO
CC GO:0043226 organelle IEP Predicted GO
CC GO:0043227 membrane-bounded organelle IEP Predicted GO
CC GO:0043229 intracellular organelle IEP Predicted GO
CC GO:0043231 intracellular membrane-bounded organelle IEP Predicted GO
CC GO:0044424 intracellular part IEP Predicted GO
CC GO:0044428 nuclear part IEP Predicted GO
CC GO:0071008 U2-type post-mRNA release spliceosomal complex IEP Predicted GO
CC GO:0071014 post-mRNA release spliceosomal complex IEP Predicted GO
BP GO:0071826 ribonucleoprotein complex subunit organization IEP Predicted GO
CC GO:1990904 ribonucleoprotein complex IEP Predicted GO
InterPro domains Description Start Stop
IPR004176 Clp_N 26 48
IPR004176 Clp_N 138 174
No external refs found!