1. Home
  2. Species
  3. Solanum lycopersicum
  4. Sequence
  5. Solyc07g018130

Solyc07g018130


Description : ABC transporter B family protein (AHRD V3.3 *** G7JF16_MEDTR)


Gene families : OG_42_0000040 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000040_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Solanum release: Solyc07g018130
Cluster HCCA clusters: Cluster_34

Target Alias Description ECC score Gene Family Method Actions
176522 No alias ATP binding cassette subfamily B4 0.02 Orthogroups_2024-Update
Bradi2g20177 No alias P-glycoprotein 11 0.02 Orthogroups_2024-Update
Brara.F03152.1 No alias subfamily ABCB transporter 0.02 Orthogroups_2024-Update
HORVU3Hr1G065240.1 No alias subfamily ABCB transporter 0.04 Orthogroups_2024-Update
Kfl00008_0360 kfl00008_0360_v1.1 (at1g02520 : 1200.0) P-glycoprotein 11 (PGP11);... 0.02 Orthogroups_2024-Update
Kfl00023_0200 kfl00023_0200_v1.1 (at3g62150 : 1239.0) P-glycoprotein 21 (PGP21);... 0.02 Orthogroups_2024-Update
LOC_Os01g50100 No alias ABC transporter, ATP-binding protein, putative, expressed 0.02 Orthogroups_2024-Update
LOC_Os01g50160 No alias MDR-like ABC transporter, putative, expressed 0.03 Orthogroups_2024-Update
LOC_Os05g04610 No alias ABC transporter, ATP-binding protein, putative, expressed 0.04 Orthogroups_2024-Update
Mp2g06270.1 No alias subfamily ABCB transporter 0.02 Orthogroups_2024-Update
PSME_00009725-RA No alias (at3g62150 : 766.0) P-glycoprotein 21 (PGP21); FUNCTIONS... 0.02 Orthogroups_2024-Update
PSME_00034484-RA No alias (at2g47000 : 865.0) Multidrug resistance P-glycoprotein... 0.03 Orthogroups_2024-Update
Potri.017G085000 No alias ABC transporter family protein 0.03 Orthogroups_2024-Update
Sobic.003G139300.3 No alias subfamily ABCB transporter 0.03 Orthogroups_2024-Update
Solyc03g005860 No alias ABC transporter B family protein (AHRD V3.3 *** G7ILW7_MEDTR) 0.03 Orthogroups_2024-Update
Solyc07g064120 No alias ABC transporter B family protein (AHRD V3.3 *** G7JF16_MEDTR) 0.03 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0005524 ATP binding IEA InterProScan predictions
BP GO:0006810 transport IEA InterProScan predictions
CC GO:0016021 integral component of membrane IEA InterProScan predictions
MF GO:0016887 ATPase activity IEA InterProScan predictions
MF GO:0042626 ATPase activity, coupled to transmembrane movement of substances IEA InterProScan predictions
BP GO:0055085 transmembrane transport IEA InterProScan predictions
Toggle parental
Type GO Term Name Evidence Source
BP GO:0000096 sulfur amino acid metabolic process IEP Predicted GO
MF GO:0003697 single-stranded DNA binding IEP Predicted GO
MF GO:0004489 methylenetetrahydrofolate reductase (NAD(P)H) activity IEP Predicted GO
BP GO:0006139 nucleobase-containing compound metabolic process IEP Predicted GO
BP GO:0006259 DNA metabolic process IEP Predicted GO
BP GO:0006260 DNA replication IEP Predicted GO
BP GO:0006270 DNA replication initiation IEP Predicted GO
BP GO:0006281 DNA repair IEP Predicted GO
BP GO:0006298 mismatch repair IEP Predicted GO
BP GO:0006401 RNA catabolic process IEP Predicted GO
BP GO:0006457 protein folding IEP Predicted GO
BP GO:0006555 methionine metabolic process IEP Predicted GO
BP GO:0006725 cellular aromatic compound metabolic process IEP Predicted GO
BP GO:0006807 nitrogen compound metabolic process IEP Predicted GO
BP GO:0006950 response to stress IEP Predicted GO
BP GO:0006974 cellular response to DNA damage stimulus IEP Predicted GO
BP GO:0009058 biosynthetic process IEP Predicted GO
BP GO:0009059 macromolecule biosynthetic process IEP Predicted GO
BP GO:0009066 aspartate family amino acid metabolic process IEP Predicted GO
BP GO:0009987 cellular process IEP Predicted GO
BP GO:0010024 phytochromobilin biosynthetic process IEP Predicted GO
MF GO:0016620 oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor IEP Predicted GO
MF GO:0016636 oxidoreductase activity, acting on the CH-CH group of donors, iron-sulfur protein as acceptor IEP Predicted GO
MF GO:0016645 oxidoreductase activity, acting on the CH-NH group of donors IEP Predicted GO
MF GO:0016646 oxidoreductase activity, acting on the CH-NH group of donors, NAD or NADP as acceptor IEP Predicted GO
MF GO:0030983 mismatched DNA binding IEP Predicted GO
CC GO:0032299 ribonuclease H2 complex IEP Predicted GO
BP GO:0033014 tetrapyrrole biosynthetic process IEP Predicted GO
BP GO:0033554 cellular response to stress IEP Predicted GO
BP GO:0034220 ion transmembrane transport IEP Predicted GO
BP GO:0034641 cellular nitrogen compound metabolic process IEP Predicted GO
BP GO:0034645 cellular macromolecule biosynthetic process IEP Predicted GO
CC GO:0042555 MCM complex IEP Predicted GO
BP GO:0043170 macromolecule metabolic process IEP Predicted GO
BP GO:0046483 heterocycle metabolic process IEP Predicted GO
BP GO:0050896 response to stimulus IEP Predicted GO
MF GO:0050897 cobalt ion binding IEP Predicted GO
MF GO:0051082 unfolded protein binding IEP Predicted GO
BP GO:0051202 phytochromobilin metabolic process IEP Predicted GO
BP GO:0051716 cellular response to stimulus IEP Predicted GO
BP GO:0090304 nucleic acid metabolic process IEP Predicted GO
BP GO:1901360 organic cyclic compound metabolic process IEP Predicted GO
InterPro domains Description Start Stop
IPR011527 ABC1_TM_dom 20 290
IPR011527 ABC1_TM_dom 709 979
IPR003439 ABC_transporter-like 361 534
IPR003439 ABC_transporter-like 1050 1198
No external refs found!