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  5. LOC_Os01g57260

LOC_Os01g57260


Description : vacuolar protein sorting-associated protein 28 homolog 2, putative, expressed


Gene families : OG_42_0005027 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0005027_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Oryza release: LOC_Os01g57260
Cluster HCCA clusters: cluster_0034

Target Alias Description ECC score Gene Family Method Actions
Brara.A01186.1 No alias component *(VPS28) of ESCRT-I complex 0.03 Orthogroups_2024-Update
Solyc03g031750 No alias Vacuolar protein sorting-associated protein VPS28 family... 0.02 Orthogroups_2024-Update
evm.model.contig_2284.18 No alias (at4g21560 : 107.0) vacuolar protein sorting-associated... 0.01 Orthogroups_2024-Update

Type GO Term Name Evidence Source
CC GO:0000813 ESCRT I complex IEA InterProScan predictions
BP GO:0032509 endosome transport via multivesicular body sorting pathway IEA InterProScan predictions
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Type GO Term Name Evidence Source
BP GO:0000075 cell cycle checkpoint IEP Predicted GO
BP GO:0000077 DNA damage checkpoint IEP Predicted GO
MF GO:0001882 nucleoside binding IEP Predicted GO
MF GO:0001883 purine nucleoside binding IEP Predicted GO
MF GO:0004618 phosphoglycerate kinase activity IEP Predicted GO
MF GO:0004842 ubiquitin-protein transferase activity IEP Predicted GO
MF GO:0005525 GTP binding IEP Predicted GO
BP GO:0006486 protein glycosylation IEP Predicted GO
MF GO:0008641 ubiquitin-like modifier activating enzyme activity IEP Predicted GO
BP GO:0016567 protein ubiquitination IEP Predicted GO
MF GO:0016774 phosphotransferase activity, carboxyl group as acceptor IEP Predicted GO
MF GO:0016877 ligase activity, forming carbon-sulfur bonds IEP Predicted GO
MF GO:0019001 guanyl nucleotide binding IEP Predicted GO
MF GO:0019787 ubiquitin-like protein transferase activity IEP Predicted GO
CC GO:0030120 vesicle coat IEP Predicted GO
CC GO:0030126 COPI vesicle coat IEP Predicted GO
CC GO:0030896 checkpoint clamp complex IEP Predicted GO
MF GO:0031072 heat shock protein binding IEP Predicted GO
BP GO:0031570 DNA integrity checkpoint IEP Predicted GO
BP GO:0032446 protein modification by small protein conjugation IEP Predicted GO
MF GO:0032549 ribonucleoside binding IEP Predicted GO
MF GO:0032550 purine ribonucleoside binding IEP Predicted GO
MF GO:0032561 guanyl ribonucleotide binding IEP Predicted GO
BP GO:0043413 macromolecule glycosylation IEP Predicted GO
CC GO:0044454 nuclear chromosome part IEP Predicted GO
BP GO:0045786 negative regulation of cell cycle IEP Predicted GO
BP GO:0050789 regulation of biological process IEP Predicted GO
BP GO:0050794 regulation of cellular process IEP Predicted GO
BP GO:0070085 glycosylation IEP Predicted GO
BP GO:0070647 protein modification by small protein conjugation or removal IEP Predicted GO
InterPro domains Description Start Stop
IPR007143 Vps28 18 208
No external refs found!