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  5. LOC_Os01g57410

LOC_Os01g57410


Description : pentatricopeptide repeat domain containing protein, putative, expressed


Gene families : OG_42_0012343 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0012343_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Oryza release: LOC_Os01g57410
Cluster HCCA clusters: cluster_0112

Target Alias Description ECC score Gene Family Method Actions
Seita.5G341800.1 No alias Unknown function 0.05 Orthogroups_2024-Update

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0000049 tRNA binding IEP Predicted GO
MF GO:0001882 nucleoside binding IEP Predicted GO
MF GO:0001883 purine nucleoside binding IEP Predicted GO
MF GO:0003677 DNA binding IEP Predicted GO
MF GO:0004019 adenylosuccinate synthase activity IEP Predicted GO
MF GO:0005525 GTP binding IEP Predicted GO
CC GO:0005886 plasma membrane IEP Predicted GO
MF GO:0008565 protein transporter activity IEP Predicted GO
MF GO:0009055 electron transfer activity IEP Predicted GO
MF GO:0016655 oxidoreductase activity, acting on NAD(P)H, quinone or similar compound as acceptor IEP Predicted GO
MF GO:0016874 ligase activity IEP Predicted GO
MF GO:0019001 guanyl nucleotide binding IEP Predicted GO
CC GO:0019898 extrinsic component of membrane IEP Predicted GO
MF GO:0032549 ribonucleoside binding IEP Predicted GO
MF GO:0032550 purine ribonucleoside binding IEP Predicted GO
MF GO:0032561 guanyl ribonucleotide binding IEP Predicted GO
MF GO:0046983 protein dimerization activity IEP Predicted GO
InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 556 585
IPR002885 Pentatricopeptide_repeat 453 483
IPR002885 Pentatricopeptide_repeat 279 312
IPR002885 Pentatricopeptide_repeat 111 139
IPR002885 Pentatricopeptide_repeat 388 436
IPR002885 Pentatricopeptide_repeat 490 537
IPR002885 Pentatricopeptide_repeat 319 367
IPR002885 Pentatricopeptide_repeat 143 192
IPR002885 Pentatricopeptide_repeat 595 644
IPR002885 Pentatricopeptide_repeat 213 261
No external refs found!