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  5. LOC_Os01g59120

LOC_Os01g59120


Description : cyclin, putative, expressed


Gene families : OG_42_0000120 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000120_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Oryza release: LOC_Os01g59120
Cluster HCCA clusters: cluster_0097

Target Alias Description ECC score Gene Family Method Actions
A4A49_20167 No alias cyclin-b2-4 0.02 Orthogroups_2024-Update
A4A49_43169 No alias cyclin-a3-2 0.03 Orthogroups_2024-Update
At5g11300 No alias Cyclin-A2-2 [Source:UniProtKB/Swiss-Prot;Acc:Q147G5] 0.02 Orthogroups_2024-Update
GRMZM5G879536 No alias CYCLIN A2;3 0.02 Orthogroups_2024-Update
Glyma.04G043600 No alias Cyclin A3;1 0.05 Orthogroups_2024-Update
Glyma.13G031500 No alias Cyclin A1;1 0.04 Orthogroups_2024-Update
HORVU0Hr1G001690.16 No alias regulatory protein *(CYCB) of cell cycle 0.03 Orthogroups_2024-Update
HORVU5Hr1G006970.2 No alias Unknown function 0.02 Orthogroups_2024-Update
HORVU5Hr1G018820.2 No alias regulatory protein *(CYCA) of cell cycle 0.05 Orthogroups_2024-Update
MA_28323g0010 No alias (at5g11300 : 355.0) mitotic-like cyclin, core cell cycle... 0.02 Orthogroups_2024-Update
MA_88982g0010 No alias (at5g11300 : 380.0) mitotic-like cyclin, core cell cycle... 0.03 Orthogroups_2024-Update
Potri.005G181400 No alias Cyclin A1;1 0.02 Orthogroups_2024-Update
Potri.006G035200 No alias Cyclin family protein 0.02 Orthogroups_2024-Update
Potri.006G247200 No alias cyclin a2;1 0.02 Orthogroups_2024-Update
Pp1s89_130V6 No alias b-like cyclin 0.02 Orthogroups_2024-Update
Sobic.009G181500.1 No alias regulatory protein *(CYCB) of cell cycle 0.03 Orthogroups_2024-Update
Solyc03g120440 No alias cyclin A2_1 0.02 Orthogroups_2024-Update
Solyc04g078310 No alias cyclin A3_1 0.02 Orthogroups_2024-Update
Solyc06g065680 No alias cyclin A2 0.02 Orthogroups_2024-Update
Solyc12g088500 No alias cyclin A3_5 0.02 Orthogroups_2024-Update
Sopen03g006030 No alias Cyclin, N-terminal domain 0.02 Orthogroups_2024-Update
Sopen12g030470 No alias Cyclin, N-terminal domain 0.02 Orthogroups_2024-Update

Type GO Term Name Evidence Source
CC GO:0005634 nucleus IEA InterProScan predictions
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Type GO Term Name Evidence Source
CC GO:0000786 nucleosome IEP Predicted GO
MF GO:0003677 DNA binding IEP Predicted GO
MF GO:0003682 chromatin binding IEP Predicted GO
MF GO:0005085 guanyl-nucleotide exchange factor activity IEP Predicted GO
MF GO:0005088 Ras guanyl-nucleotide exchange factor activity IEP Predicted GO
MF GO:0005089 Rho guanyl-nucleotide exchange factor activity IEP Predicted GO
MF GO:0005516 calmodulin binding IEP Predicted GO
BP GO:0006813 potassium ion transport IEP Predicted GO
MF GO:0015079 potassium ion transmembrane transporter activity IEP Predicted GO
MF GO:0017016 Ras GTPase binding IEP Predicted GO
MF GO:0017048 Rho GTPase binding IEP Predicted GO
MF GO:0031267 small GTPase binding IEP Predicted GO
CC GO:0032993 protein-DNA complex IEP Predicted GO
CC GO:0044427 chromosomal part IEP Predicted GO
CC GO:0044815 DNA packaging complex IEP Predicted GO
MF GO:0051020 GTPase binding IEP Predicted GO
BP GO:0071805 potassium ion transmembrane transport IEP Predicted GO
InterPro domains Description Start Stop
IPR004367 Cyclin_C-dom 322 442
IPR006671 Cyclin_N 195 320
No external refs found!