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  5. LOC_Os01g59500

LOC_Os01g59500


Description : U3 small nucleolar RNA-associated protein 11, putative, expressed


Gene families : OG_42_0005493 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0005493_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Oryza release: LOC_Os01g59500
Cluster HCCA clusters: cluster_0100

Target Alias Description ECC score Gene Family Method Actions
evm.model.contig_4447.2 No alias (at3g60360 : 109.0) EMBRYO SAC DEVELOPMENT ARREST 14... 0.02 Orthogroups_2024-Update

Type GO Term Name Evidence Source
BP GO:0006364 rRNA processing IEA InterProScan predictions
CC GO:0032040 small-subunit processome IEA InterProScan predictions
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Type GO Term Name Evidence Source
BP GO:0000375 RNA splicing, via transesterification reactions IEP Predicted GO
BP GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile IEP Predicted GO
BP GO:0000398 mRNA splicing, via spliceosome IEP Predicted GO
MF GO:0002161 aminoacyl-tRNA editing activity IEP Predicted GO
MF GO:0003854 3-beta-hydroxy-delta5-steroid dehydrogenase activity IEP Predicted GO
MF GO:0004611 phosphoenolpyruvate carboxykinase activity IEP Predicted GO
MF GO:0004826 phenylalanine-tRNA ligase activity IEP Predicted GO
BP GO:0006099 tricarboxylic acid cycle IEP Predicted GO
BP GO:0006101 citrate metabolic process IEP Predicted GO
BP GO:0006432 phenylalanyl-tRNA aminoacylation IEP Predicted GO
BP GO:0006694 steroid biosynthetic process IEP Predicted GO
MF GO:0008144 drug binding IEP Predicted GO
BP GO:0008202 steroid metabolic process IEP Predicted GO
BP GO:0008380 RNA splicing IEP Predicted GO
MF GO:0008536 Ran GTPase binding IEP Predicted GO
MF GO:0008964 phosphoenolpyruvate carboxylase activity IEP Predicted GO
BP GO:0015977 carbon fixation IEP Predicted GO
MF GO:0016229 steroid dehydrogenase activity IEP Predicted GO
MF GO:0016829 lyase activity IEP Predicted GO
MF GO:0016840 carbon-nitrogen lyase activity IEP Predicted GO
MF GO:0016843 amine-lyase activity IEP Predicted GO
MF GO:0016844 strictosidine synthase activity IEP Predicted GO
BP GO:0016999 antibiotic metabolic process IEP Predicted GO
MF GO:0017016 Ras GTPase binding IEP Predicted GO
CC GO:0019867 outer membrane IEP Predicted GO
BP GO:0022613 ribonucleoprotein complex biogenesis IEP Predicted GO
MF GO:0031267 small GTPase binding IEP Predicted GO
BP GO:0032259 methylation IEP Predicted GO
MF GO:0033764 steroid dehydrogenase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor IEP Predicted GO
MF GO:0036094 small molecule binding IEP Predicted GO
BP GO:0042254 ribosome biogenesis IEP Predicted GO
BP GO:0044085 cellular component biogenesis IEP Predicted GO
MF GO:0051020 GTPase binding IEP Predicted GO
MF GO:0051499 D-aminoacyl-tRNA deacylase activity IEP Predicted GO
BP GO:0072350 tricarboxylic acid metabolic process IEP Predicted GO
MF GO:0140101 catalytic activity, acting on a tRNA IEP Predicted GO
InterPro domains Description Start Stop
IPR007144 SSU_processome_Utp11 10 229
No external refs found!