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  5. LOC_Os01g61630

LOC_Os01g61630


Description : expressed protein


Gene families : OG_42_0008364 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0008364_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Oryza release: LOC_Os01g61630
Cluster HCCA clusters: cluster_0070

Target Alias Description ECC score Gene Family Method Actions
A4A49_19915 No alias pentatricopeptide repeat-containing protein, chloroplastic 0.02 Orthogroups_2024-Update
Sobic.003G345300.1 No alias plastidial splicing factor *(PDM3) 0.03 Orthogroups_2024-Update

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0003856 3-dehydroquinate synthase activity IEP Predicted GO
BP GO:0006284 base-excision repair IEP Predicted GO
BP GO:0009072 aromatic amino acid family metabolic process IEP Predicted GO
BP GO:0009073 aromatic amino acid family biosynthetic process IEP Predicted GO
MF GO:0016620 oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor IEP Predicted GO
MF GO:0016829 lyase activity IEP Predicted GO
MF GO:0016903 oxidoreductase activity, acting on the aldehyde or oxo group of donors IEP Predicted GO
MF GO:0022857 transmembrane transporter activity IEP Predicted GO
InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 189 245
IPR002885 Pentatricopeptide_repeat 384 428
IPR002885 Pentatricopeptide_repeat 131 174
IPR002885 Pentatricopeptide_repeat 304 350
IPR002885 Pentatricopeptide_repeat 564 588
IPR002885 Pentatricopeptide_repeat 524 552
No external refs found!