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  5. LOC_Os01g65410

LOC_Os01g65410


Description : serine hydroxymethyltransferase, mitochondrial precursor, putative, expressed


Gene families : OG_42_0000626 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000626_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Oryza release: LOC_Os01g65410
Cluster HCCA clusters: cluster_0088

Target Alias Description ECC score Gene Family Method Actions
270566 No alias serine transhydroxymethyltransferase 1 0.02 Orthogroups_2024-Update
A4A49_06356 No alias serine hydroxymethyltransferase 3, chloroplastic 0.02 Orthogroups_2024-Update
A4A49_22571 No alias serine hydroxymethyltransferase 3, chloroplastic 0.05 Orthogroups_2024-Update
At4g13890 No alias Serine hydroxymethyltransferase 5... 0.03 Orthogroups_2024-Update
Bradi2g56557 No alias serine hydroxymethyltransferase 7 0.03 Orthogroups_2024-Update
Bradi4g19470 No alias serine hydroxymethyltransferase 4 0.04 Orthogroups_2024-Update
GRMZM2G135283 No alias serine transhydroxymethyltransferase 1 0.02 Orthogroups_2024-Update
Potri.005G170800 No alias serine hydroxymethyltransferase 7 0.02 Orthogroups_2024-Update
Potri.006G232300 No alias serine hydroxymethyltransferase 3 0.03 Orthogroups_2024-Update
Seita.5G025900.1 No alias serine hydroxymethyltransferase *(SHM) & EC_2.1... 0.03 Orthogroups_2024-Update
Seita.8G115500.1 No alias serine hydroxymethyltransferase *(SHM) & EC_2.1... 0.04 Orthogroups_2024-Update

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
BP GO:0000041 transition metal ion transport IEP Predicted GO
MF GO:0004222 metalloendopeptidase activity IEP Predicted GO
MF GO:0004888 transmembrane signaling receptor activity IEP Predicted GO
MF GO:0004970 ionotropic glutamate receptor activity IEP Predicted GO
MF GO:0005230 extracellular ligand-gated ion channel activity IEP Predicted GO
MF GO:0005375 copper ion transmembrane transporter activity IEP Predicted GO
MF GO:0005509 calcium ion binding IEP Predicted GO
BP GO:0005991 trehalose metabolic process IEP Predicted GO
BP GO:0005992 trehalose biosynthetic process IEP Predicted GO
BP GO:0006810 transport IEP Predicted GO
BP GO:0006825 copper ion transport IEP Predicted GO
MF GO:0008066 glutamate receptor activity IEP Predicted GO
MF GO:0008237 metallopeptidase activity IEP Predicted GO
BP GO:0009312 oligosaccharide biosynthetic process IEP Predicted GO
MF GO:0015075 ion transmembrane transporter activity IEP Predicted GO
MF GO:0015276 ligand-gated ion channel activity IEP Predicted GO
MF GO:0015318 inorganic molecular entity transmembrane transporter activity IEP Predicted GO
MF GO:0016651 oxidoreductase activity, acting on NAD(P)H IEP Predicted GO
MF GO:0022824 transmitter-gated ion channel activity IEP Predicted GO
MF GO:0022834 ligand-gated channel activity IEP Predicted GO
MF GO:0022835 transmitter-gated channel activity IEP Predicted GO
MF GO:0022836 gated channel activity IEP Predicted GO
MF GO:0022839 ion gated channel activity IEP Predicted GO
BP GO:0022900 electron transport chain IEP Predicted GO
BP GO:0030001 metal ion transport IEP Predicted GO
MF GO:0030594 neurotransmitter receptor activity IEP Predicted GO
BP GO:0035434 copper ion transmembrane transport IEP Predicted GO
MF GO:0038023 signaling receptor activity IEP Predicted GO
BP GO:0046351 disaccharide biosynthetic process IEP Predicted GO
MF GO:0046915 transition metal ion transmembrane transporter activity IEP Predicted GO
BP GO:0051179 localization IEP Predicted GO
BP GO:0051234 establishment of localization IEP Predicted GO
MF GO:0060089 molecular transducer activity IEP Predicted GO
InterPro domains Description Start Stop
IPR039429 SHMT-like_dom 144 547
No external refs found!