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LOC_Os01g65850


Description : CHD3-type chromatin-remodeling factor PICKLE, putative, expressed


Gene families : OG_42_0000148 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000148_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Oryza release: LOC_Os01g65850
Cluster HCCA clusters: cluster_0114

Target Alias Description ECC score Gene Family Method Actions
A4A49_03849 No alias protein chromatin remodeling 4 0.03 Orthogroups_2024-Update
Brara.E03282.1 No alias Unknown function 0.03 Orthogroups_2024-Update
Cre03.g162701 No alias P-loop containing nucleoside triphosphate hydrolases... 0.01 Orthogroups_2024-Update
Potri.019G129900 No alias chromatin remodeling 1 0.03 Orthogroups_2024-Update
Seita.6G108300.1 No alias Unknown function 0.03 Orthogroups_2024-Update
Sopen02g030080 No alias SNF2 family N-terminal domain 0.03 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0005524 ATP binding IEA InterProScan predictions
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Type GO Term Name Evidence Source
MF GO:0004003 ATP-dependent DNA helicase activity IEP Predicted GO
MF GO:0005506 iron ion binding IEP Predicted GO
MF GO:0008026 ATP-dependent helicase activity IEP Predicted GO
MF GO:0008094 DNA-dependent ATPase activity IEP Predicted GO
MF GO:0016705 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen IEP Predicted GO
MF GO:0043138 3'-5' DNA helicase activity IEP Predicted GO
MF GO:0043140 ATP-dependent 3'-5' DNA helicase activity IEP Predicted GO
MF GO:0070035 purine NTP-dependent helicase activity IEP Predicted GO
InterPro domains Description Start Stop
IPR023780 Chromo_domain 468 490
IPR001650 Helicase_C 845 958
IPR000330 SNF2_N 551 822
No external refs found!