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  5. LOC_Os01g68860

LOC_Os01g68860


Description : zinc finger C-x8-C-x5-C-x3-H type family protein, expressed


Gene families : OG_42_0000464 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000464_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Oryza release: LOC_Os01g68860
Cluster HCCA clusters: cluster_0038

Target Alias Description ECC score Gene Family Method Actions
A4A49_10593 No alias zinc finger ccch domain-containing protein zfn-like protein 0.02 Orthogroups_2024-Update
A4A49_36084 No alias zinc finger ccch domain-containing protein 32 0.01 Orthogroups_2024-Update
At3g02830 No alias Zinc finger CCCH domain-containing protein 33... 0.02 Orthogroups_2024-Update
At5g16540 No alias Zinc finger CCCH domain-containing protein 57... 0.02 Orthogroups_2024-Update
Bradi2g09350 No alias Zinc finger C-x8-C-x5-C-x3-H type family protein 0.02 Orthogroups_2024-Update
Bradi4g08050 No alias zinc finger protein 1 0.05 Orthogroups_2024-Update
Bradi4g19010 No alias zinc finger protein 1 0.04 Orthogroups_2024-Update
Bradi4g39137 No alias Zinc finger C-x8-C-x5-C-x3-H type family protein 0.04 Orthogroups_2024-Update
Brara.C03010.1 No alias regulatory protein of RNA homeostasis 0.03 Orthogroups_2024-Update
GRMZM2G087032 No alias zinc finger protein 1 0.03 Orthogroups_2024-Update
GRMZM2G107491 No alias zinc finger protein 1 0.02 Orthogroups_2024-Update
Glyma.02G267500 No alias Zinc finger C-x8-C-x5-C-x3-H type family protein 0.02 Orthogroups_2024-Update
Glyma.07G250000 No alias Zinc finger C-x8-C-x5-C-x3-H type family protein 0.03 Orthogroups_2024-Update
Glyma.10G170800 No alias zinc finger protein 1 0.03 Orthogroups_2024-Update
MA_10435282g0010 No alias (q9swf9|zfnl_pea : 344.0) Zinc finger CCCH... 0.02 Orthogroups_2024-Update
Seita.3G304700.1 No alias regulatory protein of RNA homeostasis 0.02 Orthogroups_2024-Update
Seita.5G427800.1 No alias regulatory protein of RNA homeostasis 0.08 Orthogroups_2024-Update
Seita.8G116700.1 No alias regulatory protein of RNA homeostasis 0.03 Orthogroups_2024-Update
Sobic.003G402000.2 No alias regulatory protein of RNA homeostasis 0.03 Orthogroups_2024-Update
Sobic.005G111700.1 No alias regulatory protein of RNA homeostasis 0.03 Orthogroups_2024-Update
Solyc11g008900 No alias Zinc finger transcription factor 65 0.04 Orthogroups_2024-Update
Sopen11g004680 No alias Zinc finger C-x8-C-x5-C-x3-H type (and similar) 0.03 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0046872 metal ion binding IEA InterProScan predictions
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Type GO Term Name Evidence Source
BP GO:0000096 sulfur amino acid metabolic process IEP Predicted GO
BP GO:0000097 sulfur amino acid biosynthetic process IEP Predicted GO
MF GO:0003684 damaged DNA binding IEP Predicted GO
MF GO:0003860 3-hydroxyisobutyryl-CoA hydrolase activity IEP Predicted GO
CC GO:0005737 cytoplasm IEP Predicted GO
BP GO:0006289 nucleotide-excision repair IEP Predicted GO
BP GO:0006520 cellular amino acid metabolic process IEP Predicted GO
BP GO:0006534 cysteine metabolic process IEP Predicted GO
BP GO:0006535 cysteine biosynthetic process from serine IEP Predicted GO
BP GO:0006563 L-serine metabolic process IEP Predicted GO
BP GO:0006629 lipid metabolic process IEP Predicted GO
BP GO:0006720 isoprenoid metabolic process IEP Predicted GO
BP GO:0006790 sulfur compound metabolic process IEP Predicted GO
BP GO:0006810 transport IEP Predicted GO
BP GO:0008299 isoprenoid biosynthetic process IEP Predicted GO
MF GO:0008374 O-acyltransferase activity IEP Predicted GO
BP GO:0008652 cellular amino acid biosynthetic process IEP Predicted GO
MF GO:0009001 serine O-acetyltransferase activity IEP Predicted GO
BP GO:0009069 serine family amino acid metabolic process IEP Predicted GO
BP GO:0009070 serine family amino acid biosynthetic process IEP Predicted GO
CC GO:0009507 chloroplast IEP Predicted GO
CC GO:0009536 plastid IEP Predicted GO
MF GO:0009975 cyclase activity IEP Predicted GO
MF GO:0009976 tocopherol cyclase activity IEP Predicted GO
BP GO:0010498 proteasomal protein catabolic process IEP Predicted GO
BP GO:0016053 organic acid biosynthetic process IEP Predicted GO
MF GO:0016289 CoA hydrolase activity IEP Predicted GO
MF GO:0016307 phosphatidylinositol phosphate kinase activity IEP Predicted GO
MF GO:0016407 acetyltransferase activity IEP Predicted GO
MF GO:0016412 serine O-acyltransferase activity IEP Predicted GO
MF GO:0016413 O-acetyltransferase activity IEP Predicted GO
MF GO:0016790 thiolester hydrolase activity IEP Predicted GO
BP GO:0019344 cysteine biosynthetic process IEP Predicted GO
MF GO:0022804 active transmembrane transporter activity IEP Predicted GO
MF GO:0030151 molybdenum ion binding IEP Predicted GO
BP GO:0030163 protein catabolic process IEP Predicted GO
BP GO:0043161 proteasome-mediated ubiquitin-dependent protein catabolic process IEP Predicted GO
BP GO:0044255 cellular lipid metabolic process IEP Predicted GO
BP GO:0044272 sulfur compound biosynthetic process IEP Predicted GO
BP GO:0046394 carboxylic acid biosynthetic process IEP Predicted GO
MF GO:0046422 violaxanthin de-epoxidase activity IEP Predicted GO
MF GO:0050662 coenzyme binding IEP Predicted GO
BP GO:0051179 localization IEP Predicted GO
BP GO:0051234 establishment of localization IEP Predicted GO
BP GO:0055085 transmembrane transport IEP Predicted GO
BP GO:1901605 alpha-amino acid metabolic process IEP Predicted GO
BP GO:1901607 alpha-amino acid biosynthetic process IEP Predicted GO
InterPro domains Description Start Stop
IPR000571 Znf_CCCH 380 404
IPR000571 Znf_CCCH 174 198
IPR000571 Znf_CCCH 127 152
IPR000571 Znf_CCCH 82 107
IPR000571 Znf_CCCH 334 359
No external refs found!