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  5. Solyc07g021620

Solyc07g021620


Description : Pentatricopeptide repeat-containing protein (AHRD V3.3 *** A0A0B2S7U5_GLYSO)


Gene families : OG_42_0002868 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0002868_tree

Sequence : coding (download), protein (download)


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Type Description Actions
Neighborhood Solanum release: Solyc07g021620
Cluster HCCA clusters: Cluster_96

Target Alias Description ECC score Gene Family Method Actions
Sobic.003G128000.2 No alias RNA editing factor *(DYW2) 0.02 Orthogroups_2024-Update
Sopen07g011180 No alias DYW family of nucleic acid deaminases 0.02 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0008270 zinc ion binding IEA InterProScan predictions
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Type GO Term Name Evidence Source
CC GO:0000786 nucleosome IEP Predicted GO
MF GO:0003729 mRNA binding IEP Predicted GO
MF GO:0004180 carboxypeptidase activity IEP Predicted GO
MF GO:0004185 serine-type carboxypeptidase activity IEP Predicted GO
CC GO:0005849 mRNA cleavage factor complex IEP Predicted GO
BP GO:0006334 nucleosome assembly IEP Predicted GO
BP GO:0006378 mRNA polyadenylation IEP Predicted GO
MF GO:0008236 serine-type peptidase activity IEP Predicted GO
MF GO:0008238 exopeptidase activity IEP Predicted GO
MF GO:0017171 serine hydrolase activity IEP Predicted GO
CC GO:0031090 organelle membrane IEP Predicted GO
BP GO:0031123 RNA 3'-end processing IEP Predicted GO
BP GO:0031124 mRNA 3'-end processing IEP Predicted GO
CC GO:0031966 mitochondrial membrane IEP Predicted GO
CC GO:0032993 protein-DNA complex IEP Predicted GO
BP GO:0034728 nucleosome organization IEP Predicted GO
BP GO:0043631 RNA polyadenylation IEP Predicted GO
CC GO:0044422 organelle part IEP Predicted GO
CC GO:0044446 intracellular organelle part IEP Predicted GO
CC GO:0044815 DNA packaging complex IEP Predicted GO
BP GO:0065004 protein-DNA complex assembly IEP Predicted GO
MF GO:0070008 serine-type exopeptidase activity IEP Predicted GO
BP GO:0071824 protein-DNA complex subunit organization IEP Predicted GO
InterPro domains Description Start Stop
IPR032867 DYW_dom 349 456
IPR002885 Pentatricopeptide_repeat 188 230
IPR002885 Pentatricopeptide_repeat 158 182
No external refs found!