Solyc01g080150

Description : tRNA dimethylallyltransferase

Gene families : OG_42_0000391 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000391_tree

Sequence : coding (download), protein (download)

Attention: This gene has low abundance.

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	Solanum release: Solyc01g080150
Cluster	HCCA clusters: Cluster_117

Target	Alias	Description	ECC score	Gene Family Method
A4A49_26050	No alias	adenylate isopentenyltransferase 3, chloroplastic	0.03	Orthogroups_2024-Update
At1g25410	No alias	Adenylate isopentenyltransferase 6, chloroplastic...	0.05	Orthogroups_2024-Update
Brara.G00714.1	No alias	IP-type-cytokinin synthase *(IPT) & EC_2.5 transferase...	0.02	Orthogroups_2024-Update
Brara.I04365.1	No alias	IP-type-cytokinin synthase *(IPT) & EC_2.5 transferase...	0.03	Orthogroups_2024-Update
Glyma.03G151800	No alias	isopentenyltransferase 3	0.04	Orthogroups_2024-Update
Glyma.08G364900	No alias	isopentenyltransferase 5	0.03	Orthogroups_2024-Update
HORVU2Hr1G062320.8	No alias	EC_2.5 transferase transferring alkyl or aryl group,...	0.03	Orthogroups_2024-Update

Type	GO Term	Name	Evidence	Source
BP	GO:0006139	nucleobase-containing compound metabolic process	None	Extended
BP	GO:0006396	RNA processing	None	Extended
BP	GO:0006399	tRNA metabolic process	None	Extended
BP	GO:0006725	cellular aromatic compound metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008033	tRNA processing	IEA	InterProScan predictions
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0016070	RNA metabolic process	None	Extended
BP	GO:0034470	ncRNA processing	None	Extended
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
BP	GO:0034660	ncRNA metabolic process	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0046483	heterocycle metabolic process	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:0090304	nucleic acid metabolic process	None	Extended
BP	GO:1901360	organic cyclic compound metabolic process	None	Extended

Type	GO Term	Name	Evidence	Source
MF	GO:0004470	malic enzyme activity	IEP	Predicted GO
MF	GO:0004471	malate dehydrogenase (decarboxylating) (NAD+) activity	IEP	Predicted GO
MF	GO:0005509	calcium ion binding	IEP	Predicted GO
CC	GO:0005783	endoplasmic reticulum	IEP	Predicted GO
BP	GO:0006950	response to stress	IEP	Predicted GO
MF	GO:0008061	chitin binding	IEP	Predicted GO
BP	GO:0009605	response to external stimulus	IEP	Predicted GO
BP	GO:0009617	response to bacterium	IEP	Predicted GO
BP	GO:0009620	response to fungus	IEP	Predicted GO
MF	GO:0016615	malate dehydrogenase activity	IEP	Predicted GO
BP	GO:0042742	defense response to bacterium	IEP	Predicted GO
BP	GO:0043207	response to external biotic stimulus	IEP	Predicted GO
BP	GO:0050832	defense response to fungus	IEP	Predicted GO
MF	GO:0051082	unfolded protein binding	IEP	Predicted GO
BP	GO:0051704	multi-organism process	IEP	Predicted GO
BP	GO:0051707	response to other organism	IEP	Predicted GO
BP	GO:0098542	defense response to other organism	IEP	Predicted GO

InterPro domains	Description	Start	Stop
IPR018022	IPT	73	146
IPR018022	IPT	156	252

External Links

No external refs found!