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  5. LOC_Os01g72480

LOC_Os01g72480


Description : zinc finger, C3HC4 type domain containing protein, expressed


Gene families : OG_42_0004930 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0004930_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Oryza release: LOC_Os01g72480
Cluster HCCA clusters: cluster_0073

Target Alias Description ECC score Gene Family Method Actions
A4A49_07417 No alias hypothetical protein 0.04 Orthogroups_2024-Update
At5g12310 No alias AT5g19430/F7K24_180 [Source:UniProtKB/TrEMBL;Acc:Q94CL1] 0.02 Orthogroups_2024-Update
At5g19430 No alias RING/U-box superfamily protein [Source:TAIR;Acc:AT5G19430] 0.02 Orthogroups_2024-Update
Brara.C00521.1 No alias Unknown function 0.04 Orthogroups_2024-Update
Brara.J02162.1 No alias Unknown function 0.02 Orthogroups_2024-Update
GRMZM2G168707 No alias RING/U-box superfamily protein 0.04 Orthogroups_2024-Update
Seita.5G456300.1 No alias Unknown function 0.04 Orthogroups_2024-Update
Solyc11g064830 No alias RING/U-box superfamily protein (AHRD V3.3 *** AT5G19430.6) 0.02 Orthogroups_2024-Update

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
CC GO:0000439 transcription factor TFIIH core complex IEP Predicted GO
MF GO:0005096 GTPase activator activity IEP Predicted GO
CC GO:0005667 transcription factor complex IEP Predicted GO
BP GO:0006289 nucleotide-excision repair IEP Predicted GO
BP GO:0006355 regulation of transcription, DNA-templated IEP Predicted GO
BP GO:0006812 cation transport IEP Predicted GO
BP GO:0007165 signal transduction IEP Predicted GO
MF GO:0008047 enzyme activator activity IEP Predicted GO
MF GO:0008483 transaminase activity IEP Predicted GO
BP GO:0009889 regulation of biosynthetic process IEP Predicted GO
BP GO:0010468 regulation of gene expression IEP Predicted GO
BP GO:0010556 regulation of macromolecule biosynthetic process IEP Predicted GO
MF GO:0016769 transferase activity, transferring nitrogenous groups IEP Predicted GO
BP GO:0019219 regulation of nucleobase-containing compound metabolic process IEP Predicted GO
BP GO:0019222 regulation of metabolic process IEP Predicted GO
MF GO:0019825 oxygen binding IEP Predicted GO
MF GO:0019842 vitamin binding IEP Predicted GO
MF GO:0030170 pyridoxal phosphate binding IEP Predicted GO
MF GO:0030695 GTPase regulator activity IEP Predicted GO
BP GO:0031323 regulation of cellular metabolic process IEP Predicted GO
BP GO:0031326 regulation of cellular biosynthetic process IEP Predicted GO
CC GO:0044798 nuclear transcription factor complex IEP Predicted GO
MF GO:0050662 coenzyme binding IEP Predicted GO
BP GO:0050789 regulation of biological process IEP Predicted GO
BP GO:0050794 regulation of cellular process IEP Predicted GO
BP GO:0051171 regulation of nitrogen compound metabolic process IEP Predicted GO
BP GO:0051252 regulation of RNA metabolic process IEP Predicted GO
BP GO:0060255 regulation of macromolecule metabolic process IEP Predicted GO
MF GO:0060589 nucleoside-triphosphatase regulator activity IEP Predicted GO
BP GO:0065007 biological regulation IEP Predicted GO
MF GO:0070279 vitamin B6 binding IEP Predicted GO
BP GO:0080090 regulation of primary metabolic process IEP Predicted GO
CC GO:0090575 RNA polymerase II transcription factor complex IEP Predicted GO
BP GO:1903506 regulation of nucleic acid-templated transcription IEP Predicted GO
BP GO:2000112 regulation of cellular macromolecule biosynthetic process IEP Predicted GO
BP GO:2001141 regulation of RNA biosynthetic process IEP Predicted GO
InterPro domains Description Start Stop
IPR001841 Znf_RING 52 95
No external refs found!