LOC_Os01g72930

Description : pentatricopeptide, putative, expressed

Gene families : OG_42_0000001 (Orthogroups_2024-Update) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	Oryza release: LOC_Os01g72930
Cluster	HCCA clusters: cluster_0059

Target	Alias	Description	ECC score	Gene Family Method
126194	No alias	Tetratricopeptide repeat (TPR)-like superfamily protein	0.02	Orthogroups_2024-Update
73641	No alias	Tetratricopeptide repeat (TPR)-like superfamily protein	0.02	Orthogroups_2024-Update
AC216235.2_FG010	No alias	Pentatricopeptide repeat (PPR) superfamily protein	0.02	Orthogroups_2024-Update
At3g03580	No alias	Pentatricopeptide repeat-containing protein At3g03580...	0.02	Orthogroups_2024-Update
At5g03800	No alias	Glycosyltransferase (Fragment)...	0.03	Orthogroups_2024-Update
At5g13230	No alias	Putative pentatricopeptide repeat-containing protein...	0.03	Orthogroups_2024-Update
Bradi1g01280	No alias	Tetratricopeptide repeat (TPR)-like superfamily protein	0.02	Orthogroups_2024-Update
Bradi1g20230	No alias	Tetratricopeptide repeat (TPR)-like superfamily protein	0.02	Orthogroups_2024-Update
Bradi1g22990	No alias	Pentatricopeptide repeat (PPR) superfamily protein	0.02	Orthogroups_2024-Update
Bradi1g54840	No alias	Tetratricopeptide repeat (TPR)-like superfamily protein	0.02	Orthogroups_2024-Update
Bradi2g04723	No alias	Pentatricopeptide repeat (PPR) superfamily protein	0.03	Orthogroups_2024-Update
Bradi2g22840	No alias	Pentatricopeptide repeat (PPR) superfamily protein	0.03	Orthogroups_2024-Update
Bradi2g37360	No alias	Pentatricopeptide repeat (PPR) superfamily protein	0.02	Orthogroups_2024-Update
Bradi3g47510	No alias	Tetratricopeptide repeat (TPR)-like superfamily protein	0.02	Orthogroups_2024-Update
Bradi3g48960	No alias	Pentatricopeptide repeat (PPR) superfamily protein	0.02	Orthogroups_2024-Update
Bradi4g15307	No alias	Pentatricopeptide repeat (PPR) superfamily protein	0.02	Orthogroups_2024-Update
Bradi4g30190	No alias	pentatricopeptide (PPR) repeat-containing protein	0.02	Orthogroups_2024-Update
Brara.A01120.1	No alias	Unknown function	0.03	Orthogroups_2024-Update
Brara.F01240.1	No alias	RNA editing factor *(CWM1)	0.02	Orthogroups_2024-Update
Brara.F03378.1	No alias	Unknown function	0.03	Orthogroups_2024-Update
Brara.G02157.1	No alias	Unknown function	0.02	Orthogroups_2024-Update
GRMZM2G001466	No alias	Tetratricopeptide repeat (TPR)-like superfamily protein	0.02	Orthogroups_2024-Update
GRMZM2G019689	No alias	Tetratricopeptide repeat (TPR)-like superfamily protein	0.02	Orthogroups_2024-Update
GRMZM2G040947	No alias	pentatricopeptide (PPR) repeat-containing protein	0.02	Orthogroups_2024-Update
GRMZM2G144071	No alias	Tetratricopeptide repeat (TPR)-like superfamily protein	0.02	Orthogroups_2024-Update
GRMZM2G430710	No alias	Tetratricopeptide repeat (TPR)-like superfamily protein	0.02	Orthogroups_2024-Update
GRMZM2G474929	No alias	mitochondrial editing factor 21	0.02	Orthogroups_2024-Update
Glyma.01G011700	No alias	Tetratricopeptide repeat (TPR)-like superfamily protein	0.03	Orthogroups_2024-Update
Glyma.05G008800	No alias	Tetratricopeptide repeat (TPR)-like superfamily protein	0.02	Orthogroups_2024-Update
Glyma.07G033300	No alias	Tetratricopeptide repeat (TPR)-like superfamily protein	0.02	Orthogroups_2024-Update
Glyma.07G159200	No alias	Tetratricopeptide repeat (TPR)-like superfamily protein	0.03	Orthogroups_2024-Update
Glyma.08G086500	No alias	Tetratricopeptide repeat (TPR)-like superfamily protein	0.03	Orthogroups_2024-Update
Glyma.13G220450	No alias	Tetratricopeptide repeat (TPR)-like superfamily protein	0.02	Orthogroups_2024-Update
Glyma.13G313200	No alias	Tetratricopeptide repeat (TPR)-like superfamily protein	0.04	Orthogroups_2024-Update
Glyma.20G154600	No alias	Pentatricopeptide repeat (PPR-like) superfamily protein	0.03	Orthogroups_2024-Update
Glyma.20G155800	No alias	Tetratricopeptide repeat (TPR)-like superfamily protein	0.03	Orthogroups_2024-Update
HORVU0Hr1G001760.1	No alias	Unknown function	0.02	Orthogroups_2024-Update
HORVU0Hr1G018170.1	No alias	Unknown function	0.02	Orthogroups_2024-Update
HORVU3Hr1G058070.2	No alias	Unknown function	0.02	Orthogroups_2024-Update
HORVU3Hr1G085770.2	No alias	RNA editing factor *(CRR2)	0.02	Orthogroups_2024-Update
HORVU4Hr1G080660.1	No alias	Unknown function	0.03	Orthogroups_2024-Update
HORVU5Hr1G047290.1	No alias	Unknown function	0.02	Orthogroups_2024-Update
LOC_Os01g59890	No alias	pentatricopeptide, putative, expressed	0.03	Orthogroups_2024-Update
LOC_Os03g04390	No alias	pentatricopeptide, putative, expressed	0.02	Orthogroups_2024-Update
LOC_Os09g24640	No alias	pentatricopeptide, putative, expressed	0.03	Orthogroups_2024-Update
LOC_Os11g29360	No alias	pentatricopeptide, putative, expressed	0.02	Orthogroups_2024-Update
MA_101084g0010	No alias	(at1g11290 : 688.0) Pentatricopeptide Repeat Protein...	0.03	Orthogroups_2024-Update
MA_10164206g0010	No alias	(at1g11290 : 670.0) Pentatricopeptide Repeat Protein...	0.02	Orthogroups_2024-Update
MA_10248752g0010	No alias	(at3g23330 : 422.0) Tetratricopeptide repeat (TPR)-like...	0.03	Orthogroups_2024-Update
MA_14381g0010	No alias	(at3g12770 : 611.0) Encodes a pentatricopeptide repeat...	0.02	Orthogroups_2024-Update
MA_210823g0010	No alias	(at4g37170 : 594.0) Pentatricopeptide repeat (PPR)...	0.02	Orthogroups_2024-Update
MA_22485g0010	No alias	(at3g46790 : 552.0) Encodes a member of a PCMP (plant...	0.03	Orthogroups_2024-Update
MA_34492g0020	No alias	(at3g03580 : 414.0) Tetratricopeptide repeat (TPR)-like...	0.02	Orthogroups_2024-Update
MA_41676g0020	No alias	(at3g24000 : 462.0) Tetratricopeptide repeat (TPR)-like...	0.02	Orthogroups_2024-Update
MA_43615g0010	No alias	(at1g11290 : 687.0) Pentatricopeptide Repeat Protein...	0.03	Orthogroups_2024-Update
MA_59599g0010	No alias	(at3g49170 : 646.0) embryo defective 2261 (EMB2261);...	0.02	Orthogroups_2024-Update
MA_61422g0020	No alias	(at4g13650 : 721.0) Pentatricopeptide repeat (PPR)...	0.02	Orthogroups_2024-Update
MA_6329g0010	No alias	(at4g02750 : 542.0) Tetratricopeptide repeat (TPR)-like...	0.03	Orthogroups_2024-Update
MA_653417g0010	No alias	(at4g13650 : 731.0) Pentatricopeptide repeat (PPR)...	0.02	Orthogroups_2024-Update
MA_656915g0010	No alias	(at4g18750 : 657.0) Encodes a pentatricopeptide (PPR)...	0.03	Orthogroups_2024-Update
MA_658463g0010	No alias	(at4g02750 : 623.0) Tetratricopeptide repeat (TPR)-like...	0.03	Orthogroups_2024-Update
MA_86894g0010	No alias	(at3g12770 : 643.0) Encodes a pentatricopeptide repeat...	0.03	Orthogroups_2024-Update
MA_9360929g0010	No alias	(at4g13650 : 669.0) Pentatricopeptide repeat (PPR)...	0.02	Orthogroups_2024-Update
PSME_00011210-RA	No alias	(at1g15510 : 705.0) Encodes a pentatricopeptide repeat...	0.03	Orthogroups_2024-Update
PSME_00018763-RA	No alias	(at1g11290 : 389.0) Pentatricopeptide Repeat Protein...	0.02	Orthogroups_2024-Update
PSME_00044871-RA	No alias	(at2g39620 : 426.0) Pentatricopeptide repeat (PPR)...	0.02	Orthogroups_2024-Update
PSME_00056153-RA	No alias	(at2g13600 : 519.0) Pentatricopeptide repeat (PPR)...	0.02	Orthogroups_2024-Update
PSME_00056594-RA	No alias	(at3g53360 : 383.0) Tetratricopeptide repeat (TPR)-like...	0.02	Orthogroups_2024-Update
PSME_00057058-RA	No alias	(at3g12770 : 592.0) Encodes a pentatricopeptide repeat...	0.02	Orthogroups_2024-Update
Potri.001G075800	No alias	Tetratricopeptide repeat (TPR)-like superfamily protein	0.03	Orthogroups_2024-Update
Potri.002G027800	No alias	Pentatricopeptide repeat (PPR) superfamily protein	0.02	Orthogroups_2024-Update
Potri.005G019400	No alias	Tetratricopeptide repeat (TPR)-like superfamily protein	0.02	Orthogroups_2024-Update
Potri.005G215500	No alias	Tetratricopeptide repeat (TPR)-like superfamily protein	0.03	Orthogroups_2024-Update
Potri.006G211400	No alias	Pentatricopeptide repeat (PPR) superfamily protein	0.03	Orthogroups_2024-Update
Potri.010G161800	No alias	Pentatricopeptide repeat (PPR) superfamily protein	0.03	Orthogroups_2024-Update
Potri.015G018700	No alias	Tetratricopeptide repeat (TPR)-like superfamily protein	0.02	Orthogroups_2024-Update
Potri.017G084900	No alias	Pentatricopeptide repeat (PPR) superfamily protein	0.02	Orthogroups_2024-Update
Potri.017G137200	No alias	Tetratricopeptide repeat (TPR)-like superfamily protein	0.04	Orthogroups_2024-Update
Potri.T137000	No alias	Tetratricopeptide repeat (TPR)-like superfamily protein	0.03	Orthogroups_2024-Update
Pp1s13_264V6	No alias	F4I10.100; pentatricopeptide (PPR) repeat-containing...	0.02	Orthogroups_2024-Update
Seita.2G031700.1	No alias	Unknown function	0.04	Orthogroups_2024-Update
Seita.2G293300.1	No alias	Unknown function	0.03	Orthogroups_2024-Update
Seita.4G216600.1	No alias	Unknown function	0.03	Orthogroups_2024-Update
Seita.4G225800.1	No alias	Unknown function	0.03	Orthogroups_2024-Update
Seita.5G124400.1	No alias	RNA editing factor *(OTP81)	0.03	Orthogroups_2024-Update
Seita.7G205600.1	No alias	Unknown function	0.03	Orthogroups_2024-Update
Seita.9G477500.1	No alias	Unknown function	0.05	Orthogroups_2024-Update
Seita.9G489500.1	No alias	Unknown function	0.03	Orthogroups_2024-Update
Sobic.001G009400.1	No alias	Unknown function	0.02	Orthogroups_2024-Update
Sobic.001G069300.2	No alias	RNA editing factor *(DEK36)	0.03	Orthogroups_2024-Update
Sobic.001G212200.1	No alias	Unknown function	0.02	Orthogroups_2024-Update
Sobic.001G282300.1	No alias	Unknown function	0.03	Orthogroups_2024-Update
Sobic.001G347100.2	No alias	Unknown function	0.03	Orthogroups_2024-Update
Sobic.001G436600.3	No alias	Unknown function	0.03	Orthogroups_2024-Update
Sobic.002G084400.1	No alias	Unknown function	0.04	Orthogroups_2024-Update
Sobic.002G172500.3	No alias	Unknown function	0.05	Orthogroups_2024-Update
Sobic.002G292300.2	No alias	Unknown function	0.03	Orthogroups_2024-Update
Sobic.002G385200.1	No alias	Unknown function	0.03	Orthogroups_2024-Update
Sobic.003G047400.1	No alias	RNA editing factor *(OTP81)	0.03	Orthogroups_2024-Update
Sobic.003G109000.1	No alias	Unknown function	0.02	Orthogroups_2024-Update
Sobic.003G119100.1	No alias	Unknown function	0.03	Orthogroups_2024-Update
Sobic.003G237100.2	No alias	Unknown function	0.04	Orthogroups_2024-Update
Sobic.003G333200.1	No alias	Unknown function	0.03	Orthogroups_2024-Update
Sobic.004G025100.1	No alias	Unknown function	0.03	Orthogroups_2024-Update
Sobic.004G051600.1	No alias	Unknown function	0.02	Orthogroups_2024-Update
Sobic.004G053100.1	No alias	Unknown function	0.03	Orthogroups_2024-Update
Sobic.004G141600.1	No alias	Unknown function	0.02	Orthogroups_2024-Update
Sobic.004G312000.1	No alias	RNA editing factor *(CLB19)	0.04	Orthogroups_2024-Update
Sobic.005G110550.1	No alias	Unknown function	0.02	Orthogroups_2024-Update
Sobic.005G210700.1	No alias	Unknown function	0.02	Orthogroups_2024-Update
Sobic.006G069100.3	No alias	Unknown function	0.04	Orthogroups_2024-Update
Sobic.006G146400.4	No alias	RNA editing factor *(MEF12)	0.03	Orthogroups_2024-Update
Sobic.007G006800.3	No alias	Unknown function	0.02	Orthogroups_2024-Update
Sobic.007G208400.1	No alias	RNA editing factor *(REME1)	0.02	Orthogroups_2024-Update
Sobic.008G009000.1	No alias	Unknown function	0.04	Orthogroups_2024-Update
Sobic.008G041000.1	No alias	Unknown function	0.03	Orthogroups_2024-Update
Sobic.008G147400.2	No alias	Unknown function	0.04	Orthogroups_2024-Update
Sobic.009G116400.4	No alias	Unknown function	0.03	Orthogroups_2024-Update
Sobic.009G136200.1	No alias	RNA editing factor *(MEF32)	0.02	Orthogroups_2024-Update
Sobic.009G155400.3	No alias	Unknown function	0.03	Orthogroups_2024-Update
Sobic.009G241200.3	No alias	RNA editing factor *(ECB2/VAC1)	0.04	Orthogroups_2024-Update
Sobic.010G066900.1	No alias	Unknown function	0.03	Orthogroups_2024-Update
Sobic.010G189200.1	No alias	Unknown function	0.02	Orthogroups_2024-Update
Sobic.010G232700.1	No alias	Unknown function	0.02	Orthogroups_2024-Update
Solyc01g095690	No alias	Pentatricopeptide repeat-containing protein, putative...	0.03	Orthogroups_2024-Update
Sopen01g032600	No alias	PPR repeat family	0.03	Orthogroups_2024-Update
Sopen01g033110	No alias	PPR repeat	0.04	Orthogroups_2024-Update
Sopen02g039140	No alias	PPR repeat	0.02	Orthogroups_2024-Update
Sopen03g026730	No alias	PPR repeat	0.04	Orthogroups_2024-Update
Sopen03g029160	No alias	PPR repeat family	0.03	Orthogroups_2024-Update
Sopen03g038010	No alias	PPR repeat	0.02	Orthogroups_2024-Update
Sopen04g026190	No alias	PPR repeat family	0.03	Orthogroups_2024-Update

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0005488	binding	None	Extended
MF	GO:0008270	zinc ion binding	IEA	InterProScan predictions
MF	GO:0043167	ion binding	None	Extended
MF	GO:0043169	cation binding	None	Extended
MF	GO:0046872	metal ion binding	None	Extended
MF	GO:0046914	transition metal ion binding	None	Extended

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Type	GO Term	Name	Evidence	Source
MF	GO:0003677	DNA binding	IEP	Predicted GO
MF	GO:0003779	actin binding	IEP	Predicted GO
MF	GO:0008324	cation transmembrane transporter activity	IEP	Predicted GO
MF	GO:0015095	magnesium ion transmembrane transporter activity	IEP	Predicted GO
BP	GO:0015693	magnesium ion transport	IEP	Predicted GO
MF	GO:0022890	inorganic cation transmembrane transporter activity	IEP	Predicted GO
BP	GO:0030001	metal ion transport	IEP	Predicted GO
MF	GO:0030151	molybdenum ion binding	IEP	Predicted GO
BP	GO:0042126	nitrate metabolic process	IEP	Predicted GO
BP	GO:0042128	nitrate assimilation	IEP	Predicted GO
MF	GO:0046873	metal ion transmembrane transporter activity	IEP	Predicted GO
BP	GO:0070838	divalent metal ion transport	IEP	Predicted GO
BP	GO:0071941	nitrogen cycle metabolic process	IEP	Predicted GO
BP	GO:0072511	divalent inorganic cation transport	IEP	Predicted GO
BP	GO:2001057	reactive nitrogen species metabolic process	IEP	Predicted GO

InterPro domains	Description	Start	Stop
IPR002885	Pentatricopeptide_repeat	176	205
IPR002885	Pentatricopeptide_repeat	148	169
IPR002885	Pentatricopeptide_repeat	251	274
IPR002885	Pentatricopeptide_repeat	75	104
IPR002885	Pentatricopeptide_repeat	47	73
IPR002885	Pentatricopeptide_repeat	485	532
IPR002885	Pentatricopeptide_repeat	384	431
IPR002885	Pentatricopeptide_repeat	276	329
IPR032867	DYW_dom	658	775

External Links

No external refs found!

LOC_Os01g72930

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation