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  5. LOC_Os02g01332

LOC_Os02g01332


Description : ribosomal protein L6, putative, expressed


Gene families : OG_42_0002219 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0002219_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Oryza release: LOC_Os02g01332
Cluster HCCA clusters: cluster_0128

Target Alias Description ECC score Gene Family Method Actions
Bradi1g52040 No alias Ribosomal protein L6 family 0.02 Orthogroups_2024-Update
Brara.I02353.1 No alias component *(uL6) of large ribosomal-subunit (LSU) proteome 0.03 Orthogroups_2024-Update
Brara.I02694.1 No alias component *(uL6) of large ribosomal-subunit (LSU) proteome 0.02 Orthogroups_2024-Update
Cre12.g494050 No alias Ribosomal protein L6 family 0.02 Orthogroups_2024-Update
Glyma.04G226900 No alias Ribosomal protein L6 family 0.02 Orthogroups_2024-Update
MA_38141g0010 No alias (p49210|rl9_orysa : 311.0) 60S ribosomal protein L9 -... 0.02 Orthogroups_2024-Update
Pp1s58_149V6 No alias 60s ribosomal protein l9 0.03 Orthogroups_2024-Update
Pp1s79_157V6 No alias 60s ribosomal protein l9 0.03 Orthogroups_2024-Update
Sopen06g029670 No alias Ribosomal protein L6 0.02 Orthogroups_2024-Update
evm.model.contig_564.5 No alias (at4g10450 : 215.0) Ribosomal protein L6 family;... 0.03 Orthogroups_2024-Update
evm.model.tig00001532.12 No alias (p49210|rl9_orysa : 196.0) 60S ribosomal protein L9 -... 0.01 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0003735 structural constituent of ribosome IEA InterProScan predictions
CC GO:0005840 ribosome IEA InterProScan predictions
BP GO:0006412 translation IEA InterProScan predictions
MF GO:0019843 rRNA binding IEA InterProScan predictions
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Type GO Term Name Evidence Source
MF GO:0004298 threonine-type endopeptidase activity IEP Predicted GO
MF GO:0004435 phosphatidylinositol phospholipase C activity IEP Predicted GO
MF GO:0004601 peroxidase activity IEP Predicted GO
MF GO:0004620 phospholipase activity IEP Predicted GO
MF GO:0004629 phospholipase C activity IEP Predicted GO
CC GO:0005783 endoplasmic reticulum IEP Predicted GO
CC GO:0005839 proteasome core complex IEP Predicted GO
BP GO:0006810 transport IEP Predicted GO
BP GO:0006888 ER to Golgi vesicle-mediated transport IEP Predicted GO
BP GO:0006897 endocytosis IEP Predicted GO
BP GO:0006979 response to oxidative stress IEP Predicted GO
MF GO:0008081 phosphoric diester hydrolase activity IEP Predicted GO
MF GO:0015098 molybdate ion transmembrane transporter activity IEP Predicted GO
BP GO:0015689 molybdate ion transport IEP Predicted GO
CC GO:0016021 integral component of membrane IEP Predicted GO
BP GO:0016192 vesicle-mediated transport IEP Predicted GO
MF GO:0016298 lipase activity IEP Predicted GO
BP GO:0019725 cellular homeostasis IEP Predicted GO
CC GO:0019773 proteasome core complex, alpha-subunit complex IEP Predicted GO
CC GO:0030120 vesicle coat IEP Predicted GO
CC GO:0030127 COPII vesicle coat IEP Predicted GO
CC GO:0031224 intrinsic component of membrane IEP Predicted GO
CC GO:0043227 membrane-bounded organelle IEP Predicted GO
CC GO:0043231 intracellular membrane-bounded organelle IEP Predicted GO
CC GO:0044425 membrane part IEP Predicted GO
CC GO:0044433 cytoplasmic vesicle part IEP Predicted GO
BP GO:0045454 cell redox homeostasis IEP Predicted GO
BP GO:0050789 regulation of biological process IEP Predicted GO
BP GO:0050794 regulation of cellular process IEP Predicted GO
BP GO:0051179 localization IEP Predicted GO
BP GO:0051234 establishment of localization IEP Predicted GO
BP GO:0055085 transmembrane transport IEP Predicted GO
BP GO:0065007 biological regulation IEP Predicted GO
MF GO:0070003 threonine-type peptidase activity IEP Predicted GO
BP GO:0098657 import into cell IEP Predicted GO
InterPro domains Description Start Stop
IPR020040 Ribosomal_L6_a/b-dom 12 88
IPR020040 Ribosomal_L6_a/b-dom 100 179
No external refs found!