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  5. LOC_Os02g02020

LOC_Os02g02020


Description : pentatricopeptide, putative, expressed


Gene families : OG_42_0009143 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0009143_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Oryza release: LOC_Os02g02020
Cluster HCCA clusters: cluster_0043

Target Alias Description ECC score Gene Family Method Actions
HORVU6Hr1G005240.3 No alias component *(mL102) of large mitoribosomal-subunit proteome 0.03 Orthogroups_2024-Update
Seita.1G120100.1 No alias component *(mL102) of large mitoribosomal-subunit proteome 0.04 Orthogroups_2024-Update
Sobic.004G007700.1 No alias component *(mL102) of large mitoribosomal-subunit proteome 0.03 Orthogroups_2024-Update
Solyc12g019290 No alias Pentatricopeptide repeat-containing protein (AHRD V3.3... 0.02 Orthogroups_2024-Update

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
CC GO:0000313 organellar ribosome IEP Predicted GO
MF GO:0003723 RNA binding IEP Predicted GO
MF GO:0004143 diacylglycerol kinase activity IEP Predicted GO
MF GO:0004721 phosphoprotein phosphatase activity IEP Predicted GO
MF GO:0004779 sulfate adenylyltransferase activity IEP Predicted GO
MF GO:0004781 sulfate adenylyltransferase (ATP) activity IEP Predicted GO
MF GO:0004809 tRNA (guanine-N2-)-methyltransferase activity IEP Predicted GO
CC GO:0005730 nucleolus IEP Predicted GO
CC GO:0005761 mitochondrial ribosome IEP Predicted GO
BP GO:0006281 DNA repair IEP Predicted GO
BP GO:0006284 base-excision repair IEP Predicted GO
BP GO:0006974 cellular response to DNA damage stimulus IEP Predicted GO
BP GO:0007165 signal transduction IEP Predicted GO
BP GO:0007186 G protein-coupled receptor signaling pathway IEP Predicted GO
BP GO:0007205 protein kinase C-activating G protein-coupled receptor signaling pathway IEP Predicted GO
MF GO:0008131 primary amine oxidase activity IEP Predicted GO
MF GO:0008134 transcription factor binding IEP Predicted GO
MF GO:0008138 protein tyrosine/serine/threonine phosphatase activity IEP Predicted GO
MF GO:0008170 N-methyltransferase activity IEP Predicted GO
MF GO:0008173 RNA methyltransferase activity IEP Predicted GO
MF GO:0008175 tRNA methyltransferase activity IEP Predicted GO
MF GO:0008237 metallopeptidase activity IEP Predicted GO
MF GO:0008536 Ran GTPase binding IEP Predicted GO
MF GO:0008757 S-adenosylmethionine-dependent methyltransferase activity IEP Predicted GO
BP GO:0016311 dephosphorylation IEP Predicted GO
MF GO:0016423 tRNA (guanine) methyltransferase activity IEP Predicted GO
MF GO:0016638 oxidoreductase activity, acting on the CH-NH2 group of donors IEP Predicted GO
MF GO:0016641 oxidoreductase activity, acting on the CH-NH2 group of donors, oxygen as acceptor IEP Predicted GO
MF GO:0016772 transferase activity, transferring phosphorus-containing groups IEP Predicted GO
MF GO:0016779 nucleotidyltransferase activity IEP Predicted GO
MF GO:0017016 Ras GTPase binding IEP Predicted GO
BP GO:0022613 ribonucleoprotein complex biogenesis IEP Predicted GO
CC GO:0030915 Smc5-Smc6 complex IEP Predicted GO
MF GO:0031267 small GTPase binding IEP Predicted GO
BP GO:0033554 cellular response to stress IEP Predicted GO
BP GO:0042254 ribosome biogenesis IEP Predicted GO
BP GO:0044085 cellular component biogenesis IEP Predicted GO
CC GO:0044422 organelle part IEP Predicted GO
CC GO:0044424 intracellular part IEP Predicted GO
CC GO:0044446 intracellular organelle part IEP Predicted GO
CC GO:0044464 cell part IEP Predicted GO
MF GO:0048038 quinone binding IEP Predicted GO
BP GO:0050789 regulation of biological process IEP Predicted GO
BP GO:0050794 regulation of cellular process IEP Predicted GO
MF GO:0051020 GTPase binding IEP Predicted GO
BP GO:0051716 cellular response to stimulus IEP Predicted GO
BP GO:0065007 biological regulation IEP Predicted GO
MF GO:0070566 adenylyltransferase activity IEP Predicted GO
CC GO:0098798 mitochondrial protein complex IEP Predicted GO
CC GO:0106068 SUMO ligase complex IEP Predicted GO
InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 311 359
IPR002885 Pentatricopeptide_repeat 240 286
IPR002885 Pentatricopeptide_repeat 569 597
IPR002885 Pentatricopeptide_repeat 464 493
IPR002885 Pentatricopeptide_repeat 177 203
IPR002885 Pentatricopeptide_repeat 423 450
IPR002885 Pentatricopeptide_repeat 498 527
No external refs found!