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  5. LOC_Os02g06860

LOC_Os02g06860


Description : OsMADS80 - MADS-box family gene with M-alpha type-box, expressed


Gene families : OG_42_0000009 (Orthogroups_2024-Update) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Oryza release: LOC_Os02g06860
Cluster HCCA clusters: cluster_0133

Target Alias Description ECC score Gene Family Method Actions
A4A49_22632 No alias floral homeotic protein agamous 0.02 Orthogroups_2024-Update
A4A49_28440 No alias mads-box protein soc1 0.02 Orthogroups_2024-Update
A4A49_63038 No alias agamous-like mads-box protein agl19 0.02 Orthogroups_2024-Update
At1g65360 No alias Agamous-like MADS-box protein AGL23... 0.02 Orthogroups_2024-Update
At1g77950 No alias AGAMOUS-like 67 [Source:UniProtKB/TrEMBL;Acc:F4I8L6] 0.03 Orthogroups_2024-Update
At4g36590 No alias MADS-box protein [Source:UniProtKB/TrEMBL;Acc:O23222] 0.03 Orthogroups_2024-Update
Bradi3g57017 No alias AGAMOUS-like 16 0.02 Orthogroups_2024-Update
Brara.A03890.1 No alias regulatory protein *(SEPALLATA) of floral meristem... 0.03 Orthogroups_2024-Update
Brara.D00221.1 No alias MADS/AGL-type transcription factor 0.03 Orthogroups_2024-Update
Brara.E02241.1 No alias MADS/AGL-type transcription factor 0.02 Orthogroups_2024-Update
Brara.I02295.1 No alias MADS/AGL-type transcription factor 0.02 Orthogroups_2024-Update
Brara.I02486.1 No alias MADS/AGL-type transcription factor 0.02 Orthogroups_2024-Update
Brara.J00749.1 No alias MADS/AGL-type transcription factor 0.02 Orthogroups_2024-Update
Brara.J01588.1 No alias component *(PISTILLATA) of AP3-PISTILLATA organ-identity... 0.02 Orthogroups_2024-Update
Brara.K00198.1 No alias MADS/AGL-type transcription factor 0.02 Orthogroups_2024-Update
Glyma.02G179300 No alias AGAMOUS-like 62 0.03 Orthogroups_2024-Update
Glyma.05G050700 No alias AGAMOUS-like 19 0.03 Orthogroups_2024-Update
Glyma.05G163200 No alias K-box region and MADS-box transcription factor family protein 0.02 Orthogroups_2024-Update
Glyma.10G240500 No alias AGAMOUS-like 42 0.02 Orthogroups_2024-Update
Glyma.17G081200 No alias AGAMOUS-like 8 0.03 Orthogroups_2024-Update
HORVU5Hr1G110470.1 No alias MADS/AGL-type transcription factor 0.02 Orthogroups_2024-Update
HORVU6Hr1G066140.9 No alias regulatory protein *(SEPALLATA) of floral meristem... 0.03 Orthogroups_2024-Update
LOC_Os12g10540 No alias OsMADS13 - MADS-box family gene with MIKCc type-box, expressed 0.04 Orthogroups_2024-Update
LOC_Os12g31748 No alias OsMADS20 - MADS-box family gene with MIKCc type-box, expressed 0.02 Orthogroups_2024-Update
Potri.003G119700 No alias AGAMOUS-like 19 0.03 Orthogroups_2024-Update
Pp1s209_130V6 No alias mads-box transcription factor 0.01 Orthogroups_2024-Update
Seita.3G280400.1 No alias MADS/AGL-type transcription factor 0.04 Orthogroups_2024-Update
Seita.4G160200.1 No alias MADS/AGL-type transcription factor 0.03 Orthogroups_2024-Update
Seita.4G177800.1 No alias MADS/AGL-type transcription factor 0.03 Orthogroups_2024-Update
Seita.5G432700.1 No alias MADS/AGL-type transcription factor 0.03 Orthogroups_2024-Update
Seita.6G156800.1 No alias MADS/AGL-type transcription factor 0.02 Orthogroups_2024-Update
Seita.6G194800.1 No alias MADS/AGL-type transcription factor 0.03 Orthogroups_2024-Update
Seita.9G561000.1 No alias MADS/AGL-type transcription factor 0.02 Orthogroups_2024-Update
Sobic.002G258000.1 No alias regulatory protein *(SEPALLATA) of floral meristem... 0.03 Orthogroups_2024-Update
Solyc01g105800 No alias MADS box transcription factor (AHRD V1 **--... 0.03 Orthogroups_2024-Update
Sopen01g026520 No alias SRF-type transcription factor (DNA-binding and... 0.02 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0003677 DNA binding IEA InterProScan predictions
MF GO:0046983 protein dimerization activity IEA InterProScan predictions
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Type GO Term Name Evidence Source
CC GO:0000151 ubiquitin ligase complex IEP Predicted GO
CC GO:0000152 nuclear ubiquitin ligase complex IEP Predicted GO
BP GO:0003333 amino acid transmembrane transport IEP Predicted GO
MF GO:0003872 6-phosphofructokinase activity IEP Predicted GO
MF GO:0004329 formate-tetrahydrofolate ligase activity IEP Predicted GO
CC GO:0005680 anaphase-promoting complex IEP Predicted GO
BP GO:0005975 carbohydrate metabolic process IEP Predicted GO
BP GO:0006865 amino acid transport IEP Predicted GO
BP GO:0007088 regulation of mitotic nuclear division IEP Predicted GO
BP GO:0007346 regulation of mitotic cell cycle IEP Predicted GO
MF GO:0008443 phosphofructokinase activity IEP Predicted GO
BP GO:0010564 regulation of cell cycle process IEP Predicted GO
BP GO:0010965 regulation of mitotic sister chromatid separation IEP Predicted GO
BP GO:0015711 organic anion transport IEP Predicted GO
BP GO:0015849 organic acid transport IEP Predicted GO
MF GO:0019200 carbohydrate kinase activity IEP Predicted GO
BP GO:0019637 organophosphate metabolic process IEP Predicted GO
BP GO:0030071 regulation of mitotic metaphase/anaphase transition IEP Predicted GO
BP GO:0030258 lipid modification IEP Predicted GO
CC GO:0031461 cullin-RING ubiquitin ligase complex IEP Predicted GO
BP GO:0033043 regulation of organelle organization IEP Predicted GO
BP GO:0033044 regulation of chromosome organization IEP Predicted GO
BP GO:0033045 regulation of sister chromatid segregation IEP Predicted GO
BP GO:0033047 regulation of mitotic sister chromatid segregation IEP Predicted GO
BP GO:0046834 lipid phosphorylation IEP Predicted GO
BP GO:0046854 phosphatidylinositol phosphorylation IEP Predicted GO
BP GO:0046942 carboxylic acid transport IEP Predicted GO
BP GO:0051128 regulation of cellular component organization IEP Predicted GO
BP GO:0051726 regulation of cell cycle IEP Predicted GO
BP GO:0051783 regulation of nuclear division IEP Predicted GO
BP GO:0051983 regulation of chromosome segregation IEP Predicted GO
BP GO:0071702 organic substance transport IEP Predicted GO
BP GO:0071705 nitrogen compound transport IEP Predicted GO
BP GO:0090231 regulation of spindle checkpoint IEP Predicted GO
BP GO:0090266 regulation of mitotic cell cycle spindle assembly checkpoint IEP Predicted GO
BP GO:0098656 anion transmembrane transport IEP Predicted GO
BP GO:1901976 regulation of cell cycle checkpoint IEP Predicted GO
BP GO:1901987 regulation of cell cycle phase transition IEP Predicted GO
BP GO:1901990 regulation of mitotic cell cycle phase transition IEP Predicted GO
BP GO:1902099 regulation of metaphase/anaphase transition of cell cycle IEP Predicted GO
BP GO:1903504 regulation of mitotic spindle checkpoint IEP Predicted GO
BP GO:1903825 organic acid transmembrane transport IEP Predicted GO
BP GO:1905039 carboxylic acid transmembrane transport IEP Predicted GO
BP GO:1905818 regulation of chromosome separation IEP Predicted GO
InterPro domains Description Start Stop
IPR002100 TF_MADSbox 32 78
No external refs found!