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  5. LOC_Os02g06880

LOC_Os02g06880


Description : EMB2758, putative, expressed


Gene families : OG_42_0000001 (Orthogroups_2024-Update) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Oryza release: LOC_Os02g06880
Cluster HCCA clusters: cluster_0100

Target Alias Description ECC score Gene Family Method Actions
Bradi1g36120 No alias Pentatricopeptide repeat (PPR-like) superfamily protein 0.03 Orthogroups_2024-Update
Bradi3g32220 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.03 Orthogroups_2024-Update
Bradi3g37120 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.03 Orthogroups_2024-Update
Bradi3g41651 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.03 Orthogroups_2024-Update
Bradi3g50980 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.04 Orthogroups_2024-Update
Bradi4g38420 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.02 Orthogroups_2024-Update
GRMZM2G030148 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.03 Orthogroups_2024-Update
GRMZM2G110483 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.03 Orthogroups_2024-Update
Glyma.01G234100 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.03 Orthogroups_2024-Update
Glyma.04G203500 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.03 Orthogroups_2024-Update
HORVU3Hr1G036010.1 No alias Unknown function 0.03 Orthogroups_2024-Update
HORVU5Hr1G071640.4 No alias Unknown function 0.03 Orthogroups_2024-Update
HORVU5Hr1G120410.1 No alias Unknown function 0.03 Orthogroups_2024-Update
HORVU6Hr1G014780.12 No alias Unknown function 0.03 Orthogroups_2024-Update
LOC_Os01g10090 No alias pentatricopeptide, putative, expressed 0.02 Orthogroups_2024-Update
LOC_Os03g43470 No alias pentatricopeptide, putative, expressed 0.03 Orthogroups_2024-Update
MA_10157572g0010 No alias (at4g18750 : 548.0) Encodes a pentatricopeptide (PPR)... 0.04 Orthogroups_2024-Update
PSME_00024179-RA No alias (at1g11290 : 254.0) Pentatricopeptide Repeat Protein... 0.04 Orthogroups_2024-Update
PSME_00057248-RA No alias (at1g11290 : 733.0) Pentatricopeptide Repeat Protein... 0.04 Orthogroups_2024-Update
Potri.018G035900 No alias mitochondrial editing factor 21 0.03 Orthogroups_2024-Update
Seita.2G091900.1 No alias Unknown function 0.04 Orthogroups_2024-Update
Seita.4G225800.1 No alias Unknown function 0.03 Orthogroups_2024-Update
Seita.9G473200.1 No alias Unknown function 0.03 Orthogroups_2024-Update
Sobic.010G197400.1 No alias Unknown function 0.03 Orthogroups_2024-Update
Solyc06g076900 No alias Pentatricopeptide repeat-containing family protein (AHRD... 0.02 Orthogroups_2024-Update

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
CC GO:0000145 exocyst IEP Predicted GO
CC GO:0000786 nucleosome IEP Predicted GO
BP GO:0006887 exocytosis IEP Predicted GO
BP GO:0016579 protein deubiquitination IEP Predicted GO
MF GO:0019783 ubiquitin-like protein-specific protease activity IEP Predicted GO
BP GO:0032940 secretion by cell IEP Predicted GO
CC GO:0032993 protein-DNA complex IEP Predicted GO
MF GO:0036459 thiol-dependent ubiquitinyl hydrolase activity IEP Predicted GO
CC GO:0044448 cell cortex part IEP Predicted GO
CC GO:0044815 DNA packaging complex IEP Predicted GO
BP GO:0046903 secretion IEP Predicted GO
BP GO:0070646 protein modification by small protein removal IEP Predicted GO
CC GO:0099023 tethering complex IEP Predicted GO
MF GO:0101005 ubiquitinyl hydrolase activity IEP Predicted GO
InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 287 335
IPR002885 Pentatricopeptide_repeat 187 215
IPR002885 Pentatricopeptide_repeat 159 185
No external refs found!