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  5. LOC_Os02g07360

LOC_Os02g07360


Description : pentatricopeptide containing protein, putative, expressed


Gene families : OG_42_0008902 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0008902_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Oryza release: LOC_Os02g07360
Cluster HCCA clusters: cluster_0043

Target Alias Description ECC score Gene Family Method Actions
A4A49_01679 No alias pentatricopeptide repeat-containing protein 0.03 Orthogroups_2024-Update
GRMZM2G007372 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.05 Orthogroups_2024-Update
HORVU6Hr1G032270.20 No alias ndhA-specific mRNA splicing factor 0.03 Orthogroups_2024-Update
Mp1g28660.1 No alias ndhA-specific mRNA splicing factor. plastidial RNA... 0.02 Orthogroups_2024-Update
Potri.012G122800 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.02 Orthogroups_2024-Update
Seita.1G073000.1 No alias ndhA-specific mRNA splicing factor 0.04 Orthogroups_2024-Update
Sobic.004G055600.1 No alias ndhA-specific mRNA splicing factor & plastidial splicing... 0.06 Orthogroups_2024-Update
Sopen02g017930 No alias PPR repeat family 0.03 Orthogroups_2024-Update

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0003697 single-stranded DNA binding IEP Predicted GO
MF GO:0004045 aminoacyl-tRNA hydrolase activity IEP Predicted GO
MF GO:0004144 diacylglycerol O-acyltransferase activity IEP Predicted GO
MF GO:0005102 signaling receptor binding IEP Predicted GO
CC GO:0005759 mitochondrial matrix IEP Predicted GO
CC GO:0005789 endoplasmic reticulum membrane IEP Predicted GO
MF GO:0008083 growth factor activity IEP Predicted GO
BP GO:0008283 cell proliferation IEP Predicted GO
MF GO:0008565 protein transporter activity IEP Predicted GO
BP GO:0010215 cellulose microfibril organization IEP Predicted GO
BP GO:0016049 cell growth IEP Predicted GO
MF GO:0016411 acylglycerol O-acyltransferase activity IEP Predicted GO
MF GO:0016846 carbon-sulfur lyase activity IEP Predicted GO
BP GO:0030198 extracellular matrix organization IEP Predicted GO
BP GO:0030258 lipid modification IEP Predicted GO
MF GO:0030545 receptor regulator activity IEP Predicted GO
CC GO:0031225 anchored component of membrane IEP Predicted GO
CC GO:0031974 membrane-enclosed lumen IEP Predicted GO
BP GO:0040007 growth IEP Predicted GO
BP GO:0043062 extracellular structure organization IEP Predicted GO
CC GO:0043233 organelle lumen IEP Predicted GO
BP GO:0046486 glycerolipid metabolic process IEP Predicted GO
BP GO:0046834 lipid phosphorylation IEP Predicted GO
BP GO:0046854 phosphatidylinositol phosphorylation IEP Predicted GO
MF GO:0048018 receptor ligand activity IEP Predicted GO
CC GO:0070013 intracellular organelle lumen IEP Predicted GO
InterPro domains Description Start Stop
IPR033443 PPR_long 262 400
IPR002885 Pentatricopeptide_repeat 458 485
IPR002885 Pentatricopeptide_repeat 525 555
IPR002885 Pentatricopeptide_repeat 173 222
No external refs found!