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  5. LOC_Os02g16730

LOC_Os02g16730


Description : expansin precursor, putative, expressed


Gene families : OG_42_0000014 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000014_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Oryza release: LOC_Os02g16730
Cluster HCCA clusters: cluster_0120

Target Alias Description ECC score Gene Family Method Actions
At3g55500 No alias Expansin-A16 [Source:UniProtKB/Swiss-Prot;Acc:Q9M2S9] 0.03 Orthogroups_2024-Update
Glyma.15G037700 No alias expansin A4 0.03 Orthogroups_2024-Update
MA_10232070g0010 No alias (at2g40610 : 411.0) member of Alpha-Expansin Gene... 0.04 Orthogroups_2024-Update
MA_4979g0010 No alias (q40636|expa2_orysa : 406.0) Expansin-A2 precursor... 0.02 Orthogroups_2024-Update
PSME_00006590-RA No alias (at2g40610 : 387.0) member of Alpha-Expansin Gene... 0.02 Orthogroups_2024-Update
Pp1s191_40V6 No alias alpha expansin xpa5 0.02 Orthogroups_2024-Update
Pp1s223_38V6 No alias alpha expansin xpa5 0.01 Orthogroups_2024-Update

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0003723 RNA binding IEP Predicted GO
MF GO:0008168 methyltransferase activity IEP Predicted GO
MF GO:0008173 RNA methyltransferase activity IEP Predicted GO
MF GO:0015095 magnesium ion transmembrane transporter activity IEP Predicted GO
BP GO:0015693 magnesium ion transport IEP Predicted GO
MF GO:0016741 transferase activity, transferring one-carbon groups IEP Predicted GO
BP GO:0070838 divalent metal ion transport IEP Predicted GO
BP GO:0072511 divalent inorganic cation transport IEP Predicted GO
InterPro domains Description Start Stop
IPR007117 Expansin_CBD 168 245
IPR009009 RlpA-like_DPBB 69 157
No external refs found!