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  5. LOC_Os02g25060

LOC_Os02g25060


Description : NTMC2Type1.2 protein, putative, expressed


Gene families : OG_42_0000345 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000345_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Oryza release: LOC_Os02g25060
Cluster HCCA clusters: cluster_0059

Target Alias Description ECC score Gene Family Method Actions
At1g20080 No alias Synaptotagmin-2 [Source:UniProtKB/Swiss-Prot;Acc:B6ETT4] 0.03 Orthogroups_2024-Update
Brara.J02761.1 No alias membrane tethering protein (SYT1) of... 0.03 Orthogroups_2024-Update
GRMZM2G140443 No alias Calcium-dependent lipid-binding (CaLB domain) family protein 0.02 Orthogroups_2024-Update
Glyma.18G224000 No alias Calcium-dependent lipid-binding (CaLB domain) family protein 0.02 Orthogroups_2024-Update
Kfl00448_0040 kfl00448_0040_v1.1 (at2g20990 : 325.0) Encodes a plasma membrane localized... 0.01 Orthogroups_2024-Update
PSME_00032386-RA No alias (at5g11100 : 191.0) SYTD; FUNCTIONS IN:... 0.02 Orthogroups_2024-Update
Potri.002G150700 No alias Calcium-dependent lipid-binding (CaLB domain) family protein 0.04 Orthogroups_2024-Update
Potri.005G241700 No alias Calcium-dependent lipid-binding (CaLB domain) family protein 0.04 Orthogroups_2024-Update
Solyc01g111520 No alias Calcium-dependent lipid-binding (CaLB domain) family... 0.03 Orthogroups_2024-Update
Solyc10g017590 No alias LOW QUALITY:Calcium-dependent lipid-binding (CaLB... 0.02 Orthogroups_2024-Update
Solyc12g009700 No alias Calcium-dependent lipid-binding (CaLB domain) family... 0.02 Orthogroups_2024-Update
Solyc12g089330 No alias Calcium-dependent lipid-binding (CaLB domain) family... 0.02 Orthogroups_2024-Update

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
BP GO:0000075 cell cycle checkpoint IEP Predicted GO
BP GO:0000077 DNA damage checkpoint IEP Predicted GO
BP GO:0001101 response to acid chemical IEP Predicted GO
MF GO:0003677 DNA binding IEP Predicted GO
MF GO:0003690 double-stranded DNA binding IEP Predicted GO
MF GO:0003697 single-stranded DNA binding IEP Predicted GO
MF GO:0003854 3-beta-hydroxy-delta5-steroid dehydrogenase activity IEP Predicted GO
MF GO:0004003 ATP-dependent DNA helicase activity IEP Predicted GO
MF GO:0005524 ATP binding IEP Predicted GO
BP GO:0006298 mismatch repair IEP Predicted GO
BP GO:0006694 steroid biosynthetic process IEP Predicted GO
BP GO:0006810 transport IEP Predicted GO
BP GO:0006811 ion transport IEP Predicted GO
BP GO:0006950 response to stress IEP Predicted GO
BP GO:0006974 cellular response to DNA damage stimulus IEP Predicted GO
MF GO:0008026 ATP-dependent helicase activity IEP Predicted GO
MF GO:0008094 DNA-dependent ATPase activity IEP Predicted GO
MF GO:0008144 drug binding IEP Predicted GO
BP GO:0008202 steroid metabolic process IEP Predicted GO
BP GO:0008610 lipid biosynthetic process IEP Predicted GO
BP GO:0008654 phospholipid biosynthetic process IEP Predicted GO
BP GO:0010035 response to inorganic substance IEP Predicted GO
BP GO:0010167 response to nitrate IEP Predicted GO
BP GO:0015698 inorganic anion transport IEP Predicted GO
BP GO:0015706 nitrate transport IEP Predicted GO
MF GO:0016229 steroid dehydrogenase activity IEP Predicted GO
MF GO:0016780 phosphotransferase activity, for other substituted phosphate groups IEP Predicted GO
BP GO:0030001 metal ion transport IEP Predicted GO
CC GO:0030896 checkpoint clamp complex IEP Predicted GO
MF GO:0030983 mismatched DNA binding IEP Predicted GO
BP GO:0031570 DNA integrity checkpoint IEP Predicted GO
BP GO:0033554 cellular response to stress IEP Predicted GO
MF GO:0033764 steroid dehydrogenase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor IEP Predicted GO
MF GO:0035639 purine ribonucleoside triphosphate binding IEP Predicted GO
CC GO:0044454 nuclear chromosome part IEP Predicted GO
BP GO:0045786 negative regulation of cell cycle IEP Predicted GO
BP GO:0050896 response to stimulus IEP Predicted GO
BP GO:0051179 localization IEP Predicted GO
BP GO:0051234 establishment of localization IEP Predicted GO
BP GO:0051716 cellular response to stimulus IEP Predicted GO
BP GO:0051726 regulation of cell cycle IEP Predicted GO
MF GO:0070035 purine NTP-dependent helicase activity IEP Predicted GO
BP GO:1901698 response to nitrogen compound IEP Predicted GO
BP GO:1901700 response to oxygen-containing compound IEP Predicted GO
InterPro domains Description Start Stop
IPR039010 Synaptotagmin_SMP 67 248
IPR000008 C2_dom 420 521
IPR000008 C2_dom 260 360
No external refs found!