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  5. Solyc07g039550

Solyc07g039550


Description : RNA helicase DEAH-box21


Gene families : OG_42_0000210 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000210_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Solanum release: Solyc07g039550
Cluster HCCA clusters: Cluster_180

Target Alias Description ECC score Gene Family Method Actions
At1g32490 No alias ESP3 [Source:UniProtKB/TrEMBL;Acc:A0A178W3A5] 0.03 Orthogroups_2024-Update
At4g18465 No alias Probable pre-mRNA-splicing factor ATP-dependent RNA... 0.03 Orthogroups_2024-Update
Bradi1g61220 No alias RNA helicase family protein 0.03 Orthogroups_2024-Update
Bradi3g59870 No alias RNA helicase family protein 0.02 Orthogroups_2024-Update
Bradi4g19990 No alias RNA helicase family protein 0.03 Orthogroups_2024-Update
GRMZM2G300375 No alias RNA helicase family protein 0.02 Orthogroups_2024-Update
Glyma.05G146100 No alias RNA helicase family protein 0.03 Orthogroups_2024-Update
Glyma.13G232900 No alias RNA helicase family protein 0.03 Orthogroups_2024-Update
Kfl00020_0480 kfl00020_0480_v1.1 (at3g26560 : 1414.0) ATP-dependent RNA helicase,... 0.02 Orthogroups_2024-Update
Mp1g21130.1 No alias helicase Prp43 of Intron-Lariat Spliceosome complex 0.02 Orthogroups_2024-Update
Pp1s124_4V6 No alias atp-dependent rna 0.02 Orthogroups_2024-Update
Seita.8G109400.1 No alias Unknown function 0.03 Orthogroups_2024-Update
Sobic.002G313400.1 No alias RNA helicase *(Prp16) 0.02 Orthogroups_2024-Update
Sobic.003G124600.1 No alias RNA helicase *(Prp2) 0.02 Orthogroups_2024-Update
Sopen05g010270 No alias Oligonucleotide/oligosaccharide-binding (OB)-fold 0.02 Orthogroups_2024-Update
evm.model.tig00000842.2 No alias (at3g26560 : 568.0) ATP-dependent RNA helicase,... 0.01 Orthogroups_2024-Update
evm.model.tig00001628.10 No alias (at4g18465 : 156.0) RNA helicase family protein;... 0.01 Orthogroups_2024-Update
evm.model.tig00021589.28 No alias (at3g26560 : 335.0) ATP-dependent RNA helicase,... 0.02 Orthogroups_2024-Update
evm.model.tig00022075.25 No alias (at3g62310 : 1059.0) RNA helicase family protein;... 0.02 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEA InterProScan predictions
MF GO:0004386 helicase activity IEA InterProScan predictions
MF GO:0005524 ATP binding IEA InterProScan predictions
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Type GO Term Name Evidence Source
MF GO:0003968 RNA-directed 5'-3' RNA polymerase activity IEP Predicted GO
MF GO:0003980 UDP-glucose:glycoprotein glucosyltransferase activity IEP Predicted GO
MF GO:0004420 hydroxymethylglutaryl-CoA reductase (NADPH) activity IEP Predicted GO
MF GO:0004842 ubiquitin-protein transferase activity IEP Predicted GO
MF GO:0004860 protein kinase inhibitor activity IEP Predicted GO
MF GO:0004861 cyclin-dependent protein serine/threonine kinase inhibitor activity IEP Predicted GO
MF GO:0005048 signal sequence binding IEP Predicted GO
CC GO:0005875 microtubule associated complex IEP Predicted GO
BP GO:0006464 cellular protein modification process IEP Predicted GO
BP GO:0006486 protein glycosylation IEP Predicted GO
BP GO:0006487 protein N-linked glycosylation IEP Predicted GO
BP GO:0006621 protein retention in ER lumen IEP Predicted GO
BP GO:0006793 phosphorus metabolic process IEP Predicted GO
BP GO:0006796 phosphate-containing compound metabolic process IEP Predicted GO
BP GO:0006807 nitrogen compound metabolic process IEP Predicted GO
BP GO:0007050 cell cycle arrest IEP Predicted GO
CC GO:0008250 oligosaccharyltransferase complex IEP Predicted GO
MF GO:0008312 7S RNA binding IEP Predicted GO
BP GO:0009987 cellular process IEP Predicted GO
BP GO:0015936 coenzyme A metabolic process IEP Predicted GO
MF GO:0016538 cyclin-dependent protein serine/threonine kinase regulator activity IEP Predicted GO
MF GO:0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor IEP Predicted GO
MF GO:0017150 tRNA dihydrouridine synthase activity IEP Predicted GO
MF GO:0019207 kinase regulator activity IEP Predicted GO
MF GO:0019210 kinase inhibitor activity IEP Predicted GO
BP GO:0019538 protein metabolic process IEP Predicted GO
MF GO:0019787 ubiquitin-like protein transferase activity IEP Predicted GO
MF GO:0019887 protein kinase regulator activity IEP Predicted GO
MF GO:0030170 pyridoxal phosphate binding IEP Predicted GO
CC GO:0030286 dynein complex IEP Predicted GO
MF GO:0030291 protein serine/threonine kinase inhibitor activity IEP Predicted GO
BP GO:0032507 maintenance of protein location in cell IEP Predicted GO
BP GO:0033865 nucleoside bisphosphate metabolic process IEP Predicted GO
BP GO:0033875 ribonucleoside bisphosphate metabolic process IEP Predicted GO
BP GO:0034032 purine nucleoside bisphosphate metabolic process IEP Predicted GO
BP GO:0035437 maintenance of protein localization in endoplasmic reticulum IEP Predicted GO
BP GO:0036211 protein modification process IEP Predicted GO
MF GO:0042277 peptide binding IEP Predicted GO
BP GO:0043170 macromolecule metabolic process IEP Predicted GO
BP GO:0043248 proteasome assembly IEP Predicted GO
BP GO:0043412 macromolecule modification IEP Predicted GO
BP GO:0043413 macromolecule glycosylation IEP Predicted GO
BP GO:0044237 cellular metabolic process IEP Predicted GO
BP GO:0044238 primary metabolic process IEP Predicted GO
BP GO:0044260 cellular macromolecule metabolic process IEP Predicted GO
BP GO:0044267 cellular protein metabolic process IEP Predicted GO
BP GO:0045185 maintenance of protein location IEP Predicted GO
CC GO:0045261 proton-transporting ATP synthase complex, catalytic core F(1) IEP Predicted GO
BP GO:0045786 negative regulation of cell cycle IEP Predicted GO
MF GO:0046923 ER retention sequence binding IEP Predicted GO
MF GO:0046933 proton-transporting ATP synthase activity, rotational mechanism IEP Predicted GO
CC GO:0048500 signal recognition particle IEP Predicted GO
MF GO:0050662 coenzyme binding IEP Predicted GO
BP GO:0051235 maintenance of location IEP Predicted GO
BP GO:0051651 maintenance of location in cell IEP Predicted GO
BP GO:0070085 glycosylation IEP Predicted GO
MF GO:0070279 vitamin B6 binding IEP Predicted GO
BP GO:0071704 organic substance metabolic process IEP Predicted GO
BP GO:0072595 maintenance of protein localization in organelle IEP Predicted GO
MF GO:0140096 catalytic activity, acting on a protein IEP Predicted GO
MF GO:0140098 catalytic activity, acting on RNA IEP Predicted GO
BP GO:1901564 organonitrogen compound metabolic process IEP Predicted GO
InterPro domains Description Start Stop
IPR011709 DUF1605 978 1079
IPR007502 Helicase-assoc_dom 858 946
IPR011545 DEAD/DEAH_box_helicase_dom 473 622
IPR003029 S1_domain 166 233
IPR001650 Helicase_C 666 796
No external refs found!