LOC_Os02g30050

Description : ribosomal protein L29, putative, expressed

Gene families : OG_42_0001364 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0001364_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	Oryza release: LOC_Os02g30050
Cluster	HCCA clusters: cluster_0078

Target	Alias	Description	ECC score	Gene Family Method
Brara.A03526.1	No alias	component *(uL29) of large ribosomal-subunit (LSU) proteome	0.03	Orthogroups_2024-Update
Brara.E03085.1	No alias	component *(uL29) of large ribosomal-subunit (LSU) proteome	0.03	Orthogroups_2024-Update
Cre14.g617900	No alias	Ribosomal L29 family protein	0.02	Orthogroups_2024-Update
Glyma.13G133900	No alias	Ribosomal L29 family protein	0.02	Orthogroups_2024-Update
Glyma.20G240700	No alias	Ribosomal L29 family protein	0.02	Orthogroups_2024-Update
Kfl00608_0050	kfl00608_0050_v1.1	(at5g02610 : 177.0) Ribosomal L29 family protein ;...	0.03	Orthogroups_2024-Update
MA_10429159g0020	No alias	(at5g02610 : 210.0) Ribosomal L29 family protein ;...	0.02	Orthogroups_2024-Update
PSME_00033304-RA	No alias	(at5g02610 : 177.0) Ribosomal L29 family protein ;...	0.03	Orthogroups_2024-Update
Potri.010G212300	No alias	Ribosomal L29 family protein	0.02	Orthogroups_2024-Update
Pp1s133_93V6	No alias	60s ribosomal protein l35	0.02	Orthogroups_2024-Update
Pp1s1_489V6	No alias	60s ribosomal protein l35	0.02	Orthogroups_2024-Update
Seita.7G064700.1	No alias	component *(uL29) of large ribosomal-subunit (LSU) proteome	0.03	Orthogroups_2024-Update
Sobic.004G152400.1	No alias	component *(uL29) of large ribosomal-subunit (LSU) proteome	0.03	Orthogroups_2024-Update
Sobic.004G152700.1	No alias	component *(uL29) of large ribosomal-subunit (LSU) proteome	0.03	Orthogroups_2024-Update
Sopen05g033280	No alias	Ribosomal L29 protein	0.04	Orthogroups_2024-Update
evm.model.contig_654.2	No alias	(at5g02610 : 134.0) Ribosomal L29 family protein ;...	0.03	Orthogroups_2024-Update
evm.model.tig00000241.79	No alias	(at3g55170 : 158.0) Ribosomal L29 family protein ;...	0.03	Orthogroups_2024-Update

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003735	structural constituent of ribosome	IEA	InterProScan predictions
MF	GO:0005198	structural molecule activity	None	Extended
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005622	intracellular	IEA	InterProScan predictions
CC	GO:0005840	ribosome	IEA	InterProScan predictions
BP	GO:0006412	translation	IEA	InterProScan predictions
BP	GO:0006518	peptide metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009058	biosynthetic process	None	Extended
BP	GO:0009059	macromolecule biosynthetic process	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0019538	protein metabolic process	None	Extended
CC	GO:0032991	protein-containing complex	None	Extended
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
BP	GO:0034645	cellular macromolecule biosynthetic process	None	Extended
BP	GO:0043043	peptide biosynthetic process	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
CC	GO:0043226	organelle	None	Extended
CC	GO:0043228	non-membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043232	intracellular non-membrane-bounded organelle	None	Extended
BP	GO:0043603	cellular amide metabolic process	None	Extended
BP	GO:0043604	amide biosynthetic process	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0044249	cellular biosynthetic process	None	Extended
BP	GO:0044260	cellular macromolecule metabolic process	None	Extended
BP	GO:0044267	cellular protein metabolic process	None	Extended
BP	GO:0044271	cellular nitrogen compound biosynthetic process	None	Extended
CC	GO:0044424	intracellular part	None	Extended
CC	GO:0044444	cytoplasmic part	None	Extended
CC	GO:0044464	cell part	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:1901564	organonitrogen compound metabolic process	None	Extended
BP	GO:1901566	organonitrogen compound biosynthetic process	None	Extended
BP	GO:1901576	organic substance biosynthetic process	None	Extended
CC	GO:1990904	ribonucleoprotein complex	None	Extended

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Type	GO Term	Name	Evidence	Source
CC	GO:0005681	spliceosomal complex	IEP	Predicted GO
BP	GO:0006396	RNA processing	IEP	Predicted GO
BP	GO:0006397	mRNA processing	IEP	Predicted GO
BP	GO:0006777	Mo-molybdopterin cofactor biosynthetic process	IEP	Predicted GO
BP	GO:0008380	RNA splicing	IEP	Predicted GO
BP	GO:0009605	response to external stimulus	IEP	Predicted GO
BP	GO:0009607	response to biotic stimulus	IEP	Predicted GO
BP	GO:0009617	response to bacterium	IEP	Predicted GO
BP	GO:0009620	response to fungus	IEP	Predicted GO
BP	GO:0016070	RNA metabolic process	IEP	Predicted GO
MF	GO:0016717	oxidoreductase activity, acting on paired donors, with oxidation of a pair of donors resulting in the reduction of molecular oxygen to two molecules of water	IEP	Predicted GO
BP	GO:0019720	Mo-molybdopterin cofactor metabolic process	IEP	Predicted GO
BP	GO:0042742	defense response to bacterium	IEP	Predicted GO
BP	GO:0043207	response to external biotic stimulus	IEP	Predicted GO
BP	GO:0043545	molybdopterin cofactor metabolic process	IEP	Predicted GO
MF	GO:0045300	acyl-[acyl-carrier-protein] desaturase activity	IEP	Predicted GO
BP	GO:0050832	defense response to fungus	IEP	Predicted GO
BP	GO:0051189	prosthetic group metabolic process	IEP	Predicted GO
BP	GO:0051704	multi-organism process	IEP	Predicted GO
BP	GO:0051707	response to other organism	IEP	Predicted GO
BP	GO:0098542	defense response to other organism	IEP	Predicted GO

InterPro domains	Description	Start	Stop
IPR001854	Ribosomal_L29/L35	8	64

External Links

No external refs found!

LOC_Os02g30050

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation