1. Home
  2. Species
  3. Solanum lycopersicum
  4. Sequence
  5. Solyc01g080450

Solyc01g080450


Description : Pentatricopeptide repeat (PPR) superfamily protein (AHRD V3.3 *** AT1G16830.1)


Gene families : OG_42_0009855 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0009855_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Solanum release: Solyc01g080450
Cluster HCCA clusters: Cluster_205


Type GO Term Name Evidence Source

No GO annotation available for this sequence
Toggle parental
Type GO Term Name Evidence Source
CC GO:0000808 origin recognition complex IEP Predicted GO
BP GO:0003333 amino acid transmembrane transport IEP Predicted GO
MF GO:0003682 chromatin binding IEP Predicted GO
MF GO:0003950 NAD+ ADP-ribosyltransferase activity IEP Predicted GO
MF GO:0005342 organic acid transmembrane transporter activity IEP Predicted GO
CC GO:0005639 integral component of nuclear inner membrane IEP Predicted GO
CC GO:0005783 endoplasmic reticulum IEP Predicted GO
BP GO:0006457 protein folding IEP Predicted GO
BP GO:0006471 protein ADP-ribosylation IEP Predicted GO
BP GO:0006479 protein methylation IEP Predicted GO
BP GO:0006865 amino acid transport IEP Predicted GO
BP GO:0008104 protein localization IEP Predicted GO
BP GO:0008213 protein alkylation IEP Predicted GO
MF GO:0008514 organic anion transmembrane transporter activity IEP Predicted GO
MF GO:0008536 Ran GTPase binding IEP Predicted GO
BP GO:0015031 protein transport IEP Predicted GO
MF GO:0015171 amino acid transmembrane transporter activity IEP Predicted GO
BP GO:0015833 peptide transport IEP Predicted GO
MF GO:0016763 transferase activity, transferring pentosyl groups IEP Predicted GO
MF GO:0017016 Ras GTPase binding IEP Predicted GO
MF GO:0031072 heat shock protein binding IEP Predicted GO
CC GO:0031229 intrinsic component of nuclear inner membrane IEP Predicted GO
MF GO:0031267 small GTPase binding IEP Predicted GO
CC GO:0031300 intrinsic component of organelle membrane IEP Predicted GO
CC GO:0031301 integral component of organelle membrane IEP Predicted GO
BP GO:0033036 macromolecule localization IEP Predicted GO
BP GO:0042886 amide transport IEP Predicted GO
CC GO:0044453 nuclear membrane part IEP Predicted GO
BP GO:0045184 establishment of protein localization IEP Predicted GO
MF GO:0046943 carboxylic acid transmembrane transporter activity IEP Predicted GO
MF GO:0051082 unfolded protein binding IEP Predicted GO
BP GO:0071702 organic substance transport IEP Predicted GO
BP GO:0071705 nitrogen compound transport IEP Predicted GO
InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 477 498
IPR002885 Pentatricopeptide_repeat 237 262
IPR002885 Pentatricopeptide_repeat 401 450
IPR002885 Pentatricopeptide_repeat 268 311
IPR002885 Pentatricopeptide_repeat 334 382
IPR002885 Pentatricopeptide_repeat 507 555
No external refs found!