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  5. Solyc07g041310

Solyc07g041310


Description : Ribosomal protein S3 family protein (AHRD V3.3 *** AT5G35530.1)


Gene families : OG_42_0001926 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0001926_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Solanum release: Solyc07g041310
Cluster HCCA clusters: Cluster_55

Target Alias Description ECC score Gene Family Method Actions
438700 No alias Ribosomal protein S3 family protein 0.03 Orthogroups_2024-Update
A4A49_00336 No alias 40s ribosomal protein s3-3 0.12 Orthogroups_2024-Update
At2g31610 No alias 40S ribosomal protein S3-1... 0.05 Orthogroups_2024-Update
At5g35530 No alias 40S ribosomal protein S3-3... 0.05 Orthogroups_2024-Update
Bradi3g16150 No alias Ribosomal protein S3 family protein 0.12 Orthogroups_2024-Update
Brara.C01612.1 No alias component *(uS3) of small ribosomal-subunit (SSU) proteome 0.14 Orthogroups_2024-Update
Brara.C01619.1 No alias component *(uS3) of small ribosomal-subunit (SSU) proteome 0.29 Orthogroups_2024-Update
Brara.D01897.1 No alias component *(uS3) of small ribosomal-subunit (SSU) proteome 0.24 Orthogroups_2024-Update
Brara.D01899.1 No alias component *(uS3) of small ribosomal-subunit (SSU) proteome 0.16 Orthogroups_2024-Update
Cre02.g102250 No alias Ribosomal protein S3 family protein 0.06 Orthogroups_2024-Update
GRMZM2G074300 No alias Ribosomal protein S3 family protein 0.11 Orthogroups_2024-Update
Glyma.09G156600 No alias Ribosomal protein S3 family protein 0.03 Orthogroups_2024-Update
Glyma.10G133100 No alias Ribosomal protein S3 family protein 0.11 Orthogroups_2024-Update
Glyma.16G207300 No alias Ribosomal protein S3 family protein 0.06 Orthogroups_2024-Update
Glyma.16G207400 No alias Ribosomal protein S3 family protein 0.11 Orthogroups_2024-Update
Glyma.20G083300 No alias Ribosomal protein S3 family protein 0.09 Orthogroups_2024-Update
Kfl00057_0410 kfl00057_0410_v1.1 (at5g35530 : 390.0) Ribosomal protein S3 family protein;... 0.04 Orthogroups_2024-Update
MA_10436283g0010 No alias (at5g35530 : 397.0) Ribosomal protein S3 family protein;... 0.06 Orthogroups_2024-Update
Mp1g16730.1 No alias component RPS3 of SSU proteome 0.14 Orthogroups_2024-Update
PSME_00007401-RA No alias (at5g35530 : 366.0) Ribosomal protein S3 family protein;... 0.12 Orthogroups_2024-Update
PSME_00040312-RA No alias (at5g35530 : 390.0) Ribosomal protein S3 family protein;... 0.11 Orthogroups_2024-Update
Potri.006G222100 No alias Ribosomal protein S3 family protein 0.14 Orthogroups_2024-Update
Potri.018G049100 No alias Ribosomal protein S3 family protein 0.09 Orthogroups_2024-Update
Pp1s127_74V6 No alias 40s ribosomal protein 0.1 Orthogroups_2024-Update
Pp1s29_222V6 No alias 40s ribosomal protein 0.24 Orthogroups_2024-Update
Pp1s31_178V6 No alias 40s ribosomal protein 0.12 Orthogroups_2024-Update
Pp1s41_146V6 No alias 40s ribosomal protein 0.19 Orthogroups_2024-Update
Pp1s454_3V6 No alias 40s ribosomal protein 0.21 Orthogroups_2024-Update
Seita.2G385700.1 No alias component *(uS3) of small ribosomal-subunit (SSU) proteome 0.27 Orthogroups_2024-Update
Seita.6G050300.1 No alias component *(uS3) of small ribosomal-subunit (SSU) proteome 0.16 Orthogroups_2024-Update
Sobic.002G371100.1 No alias component *(uS3) of small ribosomal-subunit (SSU) proteome 0.21 Orthogroups_2024-Update
Sobic.007G053300.1 No alias component *(uS3) of small ribosomal-subunit (SSU) proteome 0.3 Orthogroups_2024-Update
Sopen07g020630 No alias Ribosomal protein S3, C-terminal domain 0.35 Orthogroups_2024-Update
Sopen08g017410 No alias Ribosomal protein S3, C-terminal domain 0.12 Orthogroups_2024-Update
Sopen08g017480 No alias Ribosomal protein S3, C-terminal domain 0.21 Orthogroups_2024-Update
evm.model.contig_2149.7 No alias (at5g35530 : 302.0) Ribosomal protein S3 family protein;... 0.34 Orthogroups_2024-Update
evm.model.tig00021462.41 No alias (at2g31610 : 358.0) Ribosomal protein S3 family protein;... 0.16 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0003723 RNA binding IEA InterProScan predictions
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Type GO Term Name Evidence Source
MF GO:0003735 structural constituent of ribosome IEP Predicted GO
MF GO:0003746 translation elongation factor activity IEP Predicted GO
MF GO:0004379 glycylpeptide N-tetradecanoyltransferase activity IEP Predicted GO
MF GO:0005198 structural molecule activity IEP Predicted GO
CC GO:0005575 cellular_component IEP Predicted GO
CC GO:0005622 intracellular IEP Predicted GO
CC GO:0005741 mitochondrial outer membrane IEP Predicted GO
CC GO:0005840 ribosome IEP Predicted GO
BP GO:0006412 translation IEP Predicted GO
BP GO:0006414 translational elongation IEP Predicted GO
BP GO:0006518 peptide metabolic process IEP Predicted GO
BP GO:0006807 nitrogen compound metabolic process IEP Predicted GO
MF GO:0008097 5S rRNA binding IEP Predicted GO
MF GO:0008135 translation factor activity, RNA binding IEP Predicted GO
BP GO:0008150 biological_process IEP Predicted GO
BP GO:0008152 metabolic process IEP Predicted GO
BP GO:0009058 biosynthetic process IEP Predicted GO
BP GO:0009059 macromolecule biosynthetic process IEP Predicted GO
BP GO:0009987 cellular process IEP Predicted GO
MF GO:0019107 myristoyltransferase activity IEP Predicted GO
BP GO:0019538 protein metabolic process IEP Predicted GO
MF GO:0019843 rRNA binding IEP Predicted GO
CC GO:0019867 outer membrane IEP Predicted GO
CC GO:0030684 preribosome IEP Predicted GO
CC GO:0031968 organelle outer membrane IEP Predicted GO
CC GO:0032040 small-subunit processome IEP Predicted GO
CC GO:0032991 protein-containing complex IEP Predicted GO
BP GO:0034641 cellular nitrogen compound metabolic process IEP Predicted GO
BP GO:0034645 cellular macromolecule biosynthetic process IEP Predicted GO
BP GO:0034660 ncRNA metabolic process IEP Predicted GO
BP GO:0043043 peptide biosynthetic process IEP Predicted GO
BP GO:0043170 macromolecule metabolic process IEP Predicted GO
CC GO:0043226 organelle IEP Predicted GO
CC GO:0043228 non-membrane-bounded organelle IEP Predicted GO
CC GO:0043229 intracellular organelle IEP Predicted GO
CC GO:0043232 intracellular non-membrane-bounded organelle IEP Predicted GO
BP GO:0043603 cellular amide metabolic process IEP Predicted GO
BP GO:0043604 amide biosynthetic process IEP Predicted GO
BP GO:0044237 cellular metabolic process IEP Predicted GO
BP GO:0044238 primary metabolic process IEP Predicted GO
BP GO:0044249 cellular biosynthetic process IEP Predicted GO
BP GO:0044260 cellular macromolecule metabolic process IEP Predicted GO
BP GO:0044267 cellular protein metabolic process IEP Predicted GO
BP GO:0044271 cellular nitrogen compound biosynthetic process IEP Predicted GO
CC GO:0044424 intracellular part IEP Predicted GO
CC GO:0044444 cytoplasmic part IEP Predicted GO
CC GO:0044464 cell part IEP Predicted GO
BP GO:0071704 organic substance metabolic process IEP Predicted GO
CC GO:0098588 bounding membrane of organelle IEP Predicted GO
CC GO:0098805 whole membrane IEP Predicted GO
BP GO:1901564 organonitrogen compound metabolic process IEP Predicted GO
BP GO:1901566 organonitrogen compound biosynthetic process IEP Predicted GO
BP GO:1901576 organic substance biosynthetic process IEP Predicted GO
CC GO:1990904 ribonucleoprotein complex IEP Predicted GO
InterPro domains Description Start Stop
IPR004044 KH_dom_type_2 23 96
No external refs found!