LOC_Os02g34410

Description : U-box domain-containing protein, putative, expressed

Gene families : OG_42_0000112 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000112_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	Oryza release: LOC_Os02g34410
Cluster	HCCA clusters: cluster_0024

Target	Alias	Description	ECC score	Gene Family Method
416356	No alias	plant U-box 24	0.02	Orthogroups_2024-Update
426053	No alias	plant U-box 24	0.02	Orthogroups_2024-Update
A4A49_10671	No alias	u-box domain-containing protein 27	0.02	Orthogroups_2024-Update
A4A49_22370	No alias	u-box domain-containing protein 26	0.02	Orthogroups_2024-Update
A4A49_33780	No alias	e3 ubiquitin-protein ligase pub23	0.03	Orthogroups_2024-Update
A4A49_38562	No alias	u-box domain-containing protein 27	0.03	Orthogroups_2024-Update
At1g49780	No alias	U-box domain-containing protein 26...	0.03	Orthogroups_2024-Update
At1g66160	No alias	U-box domain-containing protein 20...	0.02	Orthogroups_2024-Update
Bradi5g09720	No alias	plant U-box 22	0.04	Orthogroups_2024-Update
Brara.A02915.1	No alias	E3 ubiquitin ligase	0.02	Orthogroups_2024-Update
Glyma.07G106000	No alias	ARM repeat superfamily protein	0.02	Orthogroups_2024-Update
Glyma.18G042100	No alias	ARM repeat superfamily protein	0.02	Orthogroups_2024-Update
LOC_Os04g35680	No alias	U-box domain containing protein, expressed	0.02	Orthogroups_2024-Update
LOC_Os06g30330	No alias	U-box domain containing protein, putative, expressed	0.03	Orthogroups_2024-Update
MA_415393g0010	No alias	(at3g19380 : 146.0) plant U-box 25 (PUB25); FUNCTIONS...	0.02	Orthogroups_2024-Update
MA_6335g0010	No alias	"(at5g64660 : 281.0) ""CYS, MET, PRO, and GLY protein...	0.03	Orthogroups_2024-Update
PSME_00043995-RA	No alias	(at1g49780 : 227.0) plant U-box 26 (PUB26); FUNCTIONS...	0.03	Orthogroups_2024-Update
PSME_00056516-RA	No alias	(at3g19380 : 420.0) plant U-box 25 (PUB25); FUNCTIONS...	0.03	Orthogroups_2024-Update
Potri.001G216100	No alias	plant U-box 23	0.03	Orthogroups_2024-Update
Potri.002G070500	No alias	plant U-box 29	0.03	Orthogroups_2024-Update
Potri.007G110600	No alias	ARM repeat superfamily protein	0.04	Orthogroups_2024-Update
Potri.009G016100	No alias	plant U-box 24	0.02	Orthogroups_2024-Update
Potri.009G016200	No alias	plant U-box 23	0.02	Orthogroups_2024-Update
Potri.015G031000	No alias	ARM repeat superfamily protein	0.02	Orthogroups_2024-Update
Potri.017G135000	No alias	ARM repeat superfamily protein	0.02	Orthogroups_2024-Update
Pp1s198_49V6	No alias	F14J22.1; U-box domain-containing protein [Arabidopsis thaliana]	0.02	Orthogroups_2024-Update
Seita.9G474100.1	No alias	E3 ubiquitin ligase	0.02	Orthogroups_2024-Update
Sobic.001G441100.1	No alias	E3 ubiquitin ligase	0.02	Orthogroups_2024-Update
Sobic.003G367000.1	No alias	E3 ubiquitin ligase	0.03	Orthogroups_2024-Update
Sobic.004G169200.1	No alias	E3 ubiquitin ligase	0.03	Orthogroups_2024-Update
Sobic.004G169900.1	No alias	Unknown function	0.03	Orthogroups_2024-Update
Sobic.004G275800.1	No alias	E3 ubiquitin ligase	0.02	Orthogroups_2024-Update
Sobic.010G102000.1	No alias	E3 ubiquitin ligase	0.02	Orthogroups_2024-Update
Solyc01g005160	No alias	Avr9/Cf-9 rapidly elicited protein 1	0.03	Orthogroups_2024-Update
Solyc01g080920	No alias	LOW QUALITY:U-box domain-containing protein (AHRD V3.3...	0.03	Orthogroups_2024-Update
Solyc04g008100	No alias	U-box domain-containing protein (AHRD V3.3 *** A0A0A0RAL4_9ROSI)	0.03	Orthogroups_2024-Update
Sopen04g026970	No alias	U-box domain	0.03	Orthogroups_2024-Update

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003824	catalytic activity	None	Extended
MF	GO:0004842	ubiquitin-protein transferase activity	IEA	InterProScan predictions
BP	GO:0006464	cellular protein modification process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0016567	protein ubiquitination	IEA	InterProScan predictions
MF	GO:0016740	transferase activity	None	Extended
BP	GO:0019538	protein metabolic process	None	Extended
MF	GO:0019787	ubiquitin-like protein transferase activity	None	Extended
BP	GO:0032446	protein modification by small protein conjugation	None	Extended
BP	GO:0036211	protein modification process	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
BP	GO:0043412	macromolecule modification	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0044260	cellular macromolecule metabolic process	None	Extended
BP	GO:0044267	cellular protein metabolic process	None	Extended
BP	GO:0070647	protein modification by small protein conjugation or removal	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
MF	GO:0140096	catalytic activity, acting on a protein	None	Extended
BP	GO:1901564	organonitrogen compound metabolic process	None	Extended

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Type	GO Term	Name	Evidence	Source
MF	GO:0003735	structural constituent of ribosome	IEP	Predicted GO
MF	GO:0004109	coproporphyrinogen oxidase activity	IEP	Predicted GO
MF	GO:0005198	structural molecule activity	IEP	Predicted GO
CC	GO:0005622	intracellular	IEP	Predicted GO
CC	GO:0005840	ribosome	IEP	Predicted GO
BP	GO:0006066	alcohol metabolic process	IEP	Predicted GO
BP	GO:0006412	translation	IEP	Predicted GO
BP	GO:0006479	protein methylation	IEP	Predicted GO
BP	GO:0006518	peptide metabolic process	IEP	Predicted GO
BP	GO:0006778	porphyrin-containing compound metabolic process	IEP	Predicted GO
BP	GO:0006779	porphyrin-containing compound biosynthetic process	IEP	Predicted GO
MF	GO:0008170	N-methyltransferase activity	IEP	Predicted GO
BP	GO:0008213	protein alkylation	IEP	Predicted GO
MF	GO:0008276	protein methyltransferase activity	IEP	Predicted GO
BP	GO:0009058	biosynthetic process	IEP	Predicted GO
BP	GO:0009059	macromolecule biosynthetic process	IEP	Predicted GO
CC	GO:0009654	photosystem II oxygen evolving complex	IEP	Predicted GO
MF	GO:0016278	lysine N-methyltransferase activity	IEP	Predicted GO
MF	GO:0016279	protein-lysine N-methyltransferase activity	IEP	Predicted GO
BP	GO:0016569	covalent chromatin modification	IEP	Predicted GO
BP	GO:0016570	histone modification	IEP	Predicted GO
BP	GO:0016571	histone methylation	IEP	Predicted GO
MF	GO:0016634	oxidoreductase activity, acting on the CH-CH group of donors, oxygen as acceptor	IEP	Predicted GO
BP	GO:0018022	peptidyl-lysine methylation	IEP	Predicted GO
MF	GO:0018024	histone-lysine N-methyltransferase activity	IEP	Predicted GO
BP	GO:0018205	peptidyl-lysine modification	IEP	Predicted GO
BP	GO:0019751	polyol metabolic process	IEP	Predicted GO
CC	GO:0019898	extrinsic component of membrane	IEP	Predicted GO
BP	GO:0032958	inositol phosphate biosynthetic process	IEP	Predicted GO
CC	GO:0032991	protein-containing complex	IEP	Predicted GO
BP	GO:0033013	tetrapyrrole metabolic process	IEP	Predicted GO
BP	GO:0033014	tetrapyrrole biosynthetic process	IEP	Predicted GO
BP	GO:0034645	cellular macromolecule biosynthetic process	IEP	Predicted GO
BP	GO:0034968	histone lysine methylation	IEP	Predicted GO
MF	GO:0042054	histone methyltransferase activity	IEP	Predicted GO
BP	GO:0043043	peptide biosynthetic process	IEP	Predicted GO
CC	GO:0043226	organelle	IEP	Predicted GO
CC	GO:0043228	non-membrane-bounded organelle	IEP	Predicted GO
CC	GO:0043229	intracellular organelle	IEP	Predicted GO
CC	GO:0043232	intracellular non-membrane-bounded organelle	IEP	Predicted GO
BP	GO:0043414	macromolecule methylation	IEP	Predicted GO
BP	GO:0043603	cellular amide metabolic process	IEP	Predicted GO
BP	GO:0043604	amide biosynthetic process	IEP	Predicted GO
BP	GO:0043647	inositol phosphate metabolic process	IEP	Predicted GO
BP	GO:0044249	cellular biosynthetic process	IEP	Predicted GO
BP	GO:0044271	cellular nitrogen compound biosynthetic process	IEP	Predicted GO
CC	GO:0044424	intracellular part	IEP	Predicted GO
CC	GO:0044444	cytoplasmic part	IEP	Predicted GO
CC	GO:0044464	cell part	IEP	Predicted GO
BP	GO:0046165	alcohol biosynthetic process	IEP	Predicted GO
BP	GO:0046173	polyol biosynthetic process	IEP	Predicted GO
BP	GO:1901566	organonitrogen compound biosynthetic process	IEP	Predicted GO
BP	GO:1901576	organic substance biosynthetic process	IEP	Predicted GO
BP	GO:1901615	organic hydroxy compound metabolic process	IEP	Predicted GO
BP	GO:1901617	organic hydroxy compound biosynthetic process	IEP	Predicted GO
CC	GO:1990904	ribonucleoprotein complex	IEP	Predicted GO

InterPro domains	Description	Start	Stop
IPR003613	Ubox_domain	18	90

External Links

No external refs found!

LOC_Os02g34410

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation