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  5. LOC_Os02g35840

LOC_Os02g35840


Description : expressed protein


Gene families : OG_42_0000519 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000519_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Oryza release: LOC_Os02g35840
Cluster HCCA clusters: cluster_0034

Target Alias Description ECC score Gene Family Method Actions
Bradi1g33380 No alias Protein of unknown function (DUF1644) 0.05 Orthogroups_2024-Update
Bradi3g04050 No alias Protein of unknown function (DUF1644) 0.04 Orthogroups_2024-Update
GRMZM2G084729 No alias Protein of unknown function (DUF1644) 0.04 Orthogroups_2024-Update
Glyma.05G123300 No alias Protein of unknown function (DUF1644) 0.02 Orthogroups_2024-Update
Glyma.18G035500 No alias Protein of unknown function (DUF1644) 0.02 Orthogroups_2024-Update
Solyc01g104500 No alias zinc finger/BTB domain protein, putative (DUF1644) (AHRD... 0.04 Orthogroups_2024-Update
Sopen01g047000 No alias Protein of unknown function (DUF1644) 0.03 Orthogroups_2024-Update

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0000287 magnesium ion binding IEP Predicted GO
CC GO:0000439 transcription factor TFIIH core complex IEP Predicted GO
CC GO:0000813 ESCRT I complex IEP Predicted GO
MF GO:0004427 inorganic diphosphatase activity IEP Predicted GO
MF GO:0004749 ribose phosphate diphosphokinase activity IEP Predicted GO
MF GO:0004832 valine-tRNA ligase activity IEP Predicted GO
MF GO:0005515 protein binding IEP Predicted GO
MF GO:0005524 ATP binding IEP Predicted GO
CC GO:0005737 cytoplasm IEP Predicted GO
BP GO:0006289 nucleotide-excision repair IEP Predicted GO
BP GO:0006438 valyl-tRNA aminoacylation IEP Predicted GO
BP GO:0007186 G protein-coupled receptor signaling pathway IEP Predicted GO
MF GO:0008134 transcription factor binding IEP Predicted GO
MF GO:0008144 drug binding IEP Predicted GO
BP GO:0016192 vesicle-mediated transport IEP Predicted GO
BP GO:0016197 endosomal transport IEP Predicted GO
MF GO:0016778 diphosphotransferase activity IEP Predicted GO
MF GO:0016892 endoribonuclease activity, producing 3'-phosphomonoesters IEP Predicted GO
MF GO:0016894 endonuclease activity, active with either ribo- or deoxyribonucleic acids and producing 3'-phosphomonoesters IEP Predicted GO
MF GO:0017025 TBP-class protein binding IEP Predicted GO
CC GO:0030126 COPI vesicle coat IEP Predicted GO
MF GO:0031072 heat shock protein binding IEP Predicted GO
BP GO:0032509 endosome transport via multivesicular body sorting pathway IEP Predicted GO
MF GO:0033897 ribonuclease T2 activity IEP Predicted GO
CC GO:0036452 ESCRT complex IEP Predicted GO
CC GO:0044422 organelle part IEP Predicted GO
CC GO:0044433 cytoplasmic vesicle part IEP Predicted GO
CC GO:0044440 endosomal part IEP Predicted GO
CC GO:0044446 intracellular organelle part IEP Predicted GO
CC GO:0044798 nuclear transcription factor complex IEP Predicted GO
BP GO:0046907 intracellular transport IEP Predicted GO
BP GO:0051641 cellular localization IEP Predicted GO
BP GO:0051649 establishment of localization in cell IEP Predicted GO
BP GO:0071985 multivesicular body sorting pathway IEP Predicted GO
CC GO:0090575 RNA polymerase II transcription factor complex IEP Predicted GO
InterPro domains Description Start Stop
IPR012866 DUF1644 52 214
No external refs found!