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  5. LOC_Os02g37862

LOC_Os02g37862


Description : 60S ribosomal protein L6, putative, expressed


Gene families : OG_42_0002426 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0002426_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Oryza release: LOC_Os02g37862
Cluster HCCA clusters: cluster_0083

Target Alias Description ECC score Gene Family Method Actions
270686 No alias Ribosomal protein L6 family protein 0.05 Orthogroups_2024-Update
Bradi3g08900 No alias Ribosomal protein L6 family protein 0.05 Orthogroups_2024-Update
Bradi3g47410 No alias Ribosomal protein L6 family protein 0.04 Orthogroups_2024-Update
Brara.H02417.1 No alias component *(eL6) of large ribosomal-subunit (LSU) proteome 0.04 Orthogroups_2024-Update
Brara.I04782.1 No alias component *(eL6) of large ribosomal-subunit (LSU) proteome 0.04 Orthogroups_2024-Update
Cre01.g011000 No alias Ribosomal protein L6 family protein 0.01 Orthogroups_2024-Update
Glyma.05G184000 No alias Ribosomal protein L6 family protein 0.05 Orthogroups_2024-Update
Glyma.08G151900 No alias Ribosomal protein L6 family protein 0.03 Orthogroups_2024-Update
Glyma.15G271300 No alias Ribosomal protein L6 family protein 0.03 Orthogroups_2024-Update
HORVU6Hr1G041750.3 No alias component *(eL6) of large ribosomal-subunit (LSU) proteome 0.02 Orthogroups_2024-Update
HORVU6Hr1G052600.3 No alias component *(eL6) of large ribosomal-subunit (LSU) proteome 0.03 Orthogroups_2024-Update
Kfl00488_0040 kfl00488_0040_v1.1 (p34091|rl6_mescr : 230.0) 60S ribosomal protein L6... 0.02 Orthogroups_2024-Update
MA_108607g0010 No alias (p34091|rl6_mescr : 343.0) 60S ribosomal protein L6... 0.03 Orthogroups_2024-Update
PSME_00031628-RA No alias (p34091|rl6_mescr : 312.0) 60S ribosomal protein L6... 0.03 Orthogroups_2024-Update
PSME_00044973-RA No alias (p34091|rl6_mescr : 327.0) 60S ribosomal protein L6... 0.04 Orthogroups_2024-Update
Pp1s126_115V6 No alias 60s ribosomal protein l6 0.02 Orthogroups_2024-Update
Pp1s59_122V6 No alias 60s ribosomal protein 0.03 Orthogroups_2024-Update
Seita.7G134600.1 No alias component *(eL6) of large ribosomal-subunit (LSU) proteome 0.03 Orthogroups_2024-Update
Sobic.004G198400.1 No alias component *(eL6) of large ribosomal-subunit (LSU) proteome 0.05 Orthogroups_2024-Update
Sobic.006G116700.1 No alias component *(eL6) of large ribosomal-subunit (LSU) proteome 0.05 Orthogroups_2024-Update
Solyc04g014720 No alias 60S ribosomal protein L6 (AHRD V3.3 *** RL6_MESCR) 0.03 Orthogroups_2024-Update
Solyc05g054070 No alias 60S ribosomal protein L6 (AHRD V3.3 *** RL6_MESCR) 0.03 Orthogroups_2024-Update
Sopen05g032560 No alias Ribosomal protein L6e 0.03 Orthogroups_2024-Update
Sopen11g006900 No alias Ribosomal protein L6e 0.04 Orthogroups_2024-Update
evm.model.contig_2016.11 No alias (p34091|rl6_mescr : 131.0) 60S ribosomal protein L6... 0.02 Orthogroups_2024-Update
evm.model.tig00021127.127 No alias (at1g74050 : 196.0) Ribosomal protein L6 family protein;... 0.02 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0003735 structural constituent of ribosome IEA InterProScan predictions
CC GO:0005622 intracellular IEA InterProScan predictions
CC GO:0005840 ribosome IEA InterProScan predictions
BP GO:0006412 translation IEA InterProScan predictions
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Type GO Term Name Evidence Source
MF GO:0003723 RNA binding IEP Predicted GO
MF GO:0003746 translation elongation factor activity IEP Predicted GO
MF GO:0003887 DNA-directed DNA polymerase activity IEP Predicted GO
MF GO:0004425 indole-3-glycerol-phosphate synthase activity IEP Predicted GO
MF GO:0004527 exonuclease activity IEP Predicted GO
MF GO:0004576 oligosaccharyl transferase activity IEP Predicted GO
MF GO:0004579 dolichyl-diphosphooligosaccharide-protein glycotransferase activity IEP Predicted GO
CC GO:0005783 endoplasmic reticulum IEP Predicted GO
BP GO:0006414 translational elongation IEP Predicted GO
MF GO:0008097 5S rRNA binding IEP Predicted GO
MF GO:0008134 transcription factor binding IEP Predicted GO
MF GO:0008135 translation factor activity, RNA binding IEP Predicted GO
MF GO:0008408 3'-5' exonuclease activity IEP Predicted GO
MF GO:0016717 oxidoreductase activity, acting on paired donors, with oxidation of a pair of donors resulting in the reduction of molecular oxygen to two molecules of water IEP Predicted GO
MF GO:0017025 TBP-class protein binding IEP Predicted GO
MF GO:0019843 rRNA binding IEP Predicted GO
MF GO:0034061 DNA polymerase activity IEP Predicted GO
InterPro domains Description Start Stop
IPR000915 60S_ribosomal_L6E 112 219
No external refs found!