1. Home
  2. Species
  3. Oryza sativa
  4. Sequence
  5. LOC_Os02g40460

LOC_Os02g40460


Description : S1 RNA binding domain containing protein, expressed


Gene families : OG_42_0002046 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0002046_tree

Sequence : coding (download), protein (download)


Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Oryza release: LOC_Os02g40460
Cluster HCCA clusters: cluster_0027

Target Alias Description ECC score Gene Family Method Actions
84724 No alias polyribonucleotide nucleotidyltransferase, putative 0.04 Orthogroups_2024-Update
Bradi1g56280 No alias polyribonucleotide nucleotidyltransferase, putative 0.02 Orthogroups_2024-Update
Bradi3g48860 No alias polyribonucleotide nucleotidyltransferase, putative 0.06 Orthogroups_2024-Update
Brara.C00633.1 No alias phosphorolytic exoribonuclease *(PNP) & EC_2.7... 0.02 Orthogroups_2024-Update
Brara.J02010.1 No alias phosphorolytic exoribonuclease *(PNP) & EC_2.7... 0.03 Orthogroups_2024-Update
HORVU2Hr1G056650.13 No alias EC_2.7 transferase transferring phosphorus-containing... 0.03 Orthogroups_2024-Update
HORVU2Hr1G056710.5 No alias EC_2.7 transferase transferring phosphorus-containing... 0.06 Orthogroups_2024-Update
HORVU6Hr1G057570.8 No alias phosphorolytic exoribonuclease *(PNP) & EC_2.7... 0.04 Orthogroups_2024-Update
Mp7g12350.1 No alias polynucleotide phosphorylase (PNP) 0.02 Orthogroups_2024-Update
Pp1s307_19V6 No alias polyribonucleotide nucleotidyltransferase 0.01 Orthogroups_2024-Update
Seita.1G235700.1 No alias phosphorolytic exoribonuclease *(PNP) & EC_2.7... 0.04 Orthogroups_2024-Update
Seita.2G044800.1 No alias EC_2.7 transferase transferring phosphorus-containing... 0.03 Orthogroups_2024-Update
Sobic.004G215900.1 No alias phosphorolytic exoribonuclease *(PNP) & EC_2.7... 0.08 Orthogroups_2024-Update
Solyc08g066140 No alias Polyribonucleotide nucleotidyltransferase (AHRD V3.3 *-*... 0.03 Orthogroups_2024-Update
evm.model.tig00021073.40 No alias (at5g14580 : 307.0) polyribonucleotide... 0.01 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEA InterProScan predictions
Toggle parental
Type GO Term Name Evidence Source
BP GO:0000075 cell cycle checkpoint IEP Predicted GO
BP GO:0000077 DNA damage checkpoint IEP Predicted GO
MF GO:0000166 nucleotide binding IEP Predicted GO
MF GO:0003697 single-stranded DNA binding IEP Predicted GO
MF GO:0003723 RNA binding IEP Predicted GO
MF GO:0004003 ATP-dependent DNA helicase activity IEP Predicted GO
MF GO:0004176 ATP-dependent peptidase activity IEP Predicted GO
MF GO:0004609 phosphatidylserine decarboxylase activity IEP Predicted GO
MF GO:0004672 protein kinase activity IEP Predicted GO
MF GO:0005515 protein binding IEP Predicted GO
MF GO:0005524 ATP binding IEP Predicted GO
BP GO:0006082 organic acid metabolic process IEP Predicted GO
BP GO:0006396 RNA processing IEP Predicted GO
BP GO:0006468 protein phosphorylation IEP Predicted GO
BP GO:0006520 cellular amino acid metabolic process IEP Predicted GO
BP GO:0006793 phosphorus metabolic process IEP Predicted GO
BP GO:0006796 phosphate-containing compound metabolic process IEP Predicted GO
MF GO:0008026 ATP-dependent helicase activity IEP Predicted GO
MF GO:0008094 DNA-dependent ATPase activity IEP Predicted GO
MF GO:0008144 drug binding IEP Predicted GO
BP GO:0016070 RNA metabolic process IEP Predicted GO
BP GO:0016310 phosphorylation IEP Predicted GO
MF GO:0016462 pyrophosphatase activity IEP Predicted GO
MF GO:0016620 oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor IEP Predicted GO
MF GO:0016817 hydrolase activity, acting on acid anhydrides IEP Predicted GO
MF GO:0016818 hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides IEP Predicted GO
MF GO:0016887 ATPase activity IEP Predicted GO
MF GO:0016903 oxidoreductase activity, acting on the aldehyde or oxo group of donors IEP Predicted GO
MF GO:0017076 purine nucleotide binding IEP Predicted GO
MF GO:0017111 nucleoside-triphosphatase activity IEP Predicted GO
BP GO:0019752 carboxylic acid metabolic process IEP Predicted GO
BP GO:0022613 ribonucleoprotein complex biogenesis IEP Predicted GO
MF GO:0030554 adenyl nucleotide binding IEP Predicted GO
CC GO:0030896 checkpoint clamp complex IEP Predicted GO
BP GO:0031570 DNA integrity checkpoint IEP Predicted GO
MF GO:0032553 ribonucleotide binding IEP Predicted GO
MF GO:0032555 purine ribonucleotide binding IEP Predicted GO
MF GO:0032559 adenyl ribonucleotide binding IEP Predicted GO
BP GO:0034660 ncRNA metabolic process IEP Predicted GO
MF GO:0035639 purine ribonucleoside triphosphate binding IEP Predicted GO
MF GO:0036094 small molecule binding IEP Predicted GO
BP GO:0042254 ribosome biogenesis IEP Predicted GO
MF GO:0042623 ATPase activity, coupled IEP Predicted GO
MF GO:0043168 anion binding IEP Predicted GO
BP GO:0043436 oxoacid metabolic process IEP Predicted GO
CC GO:0044454 nuclear chromosome part IEP Predicted GO
BP GO:0045786 negative regulation of cell cycle IEP Predicted GO
MF GO:0051087 chaperone binding IEP Predicted GO
MF GO:0070035 purine NTP-dependent helicase activity IEP Predicted GO
MF GO:0097367 carbohydrate derivative binding IEP Predicted GO
MF GO:1901265 nucleoside phosphate binding IEP Predicted GO
InterPro domains Description Start Stop
IPR003029 S1_domain 79 149
No external refs found!