1. Home
  2. Species
  3. Solanum lycopersicum
  4. Sequence
  5. Solyc07g042600

Solyc07g042600


Description : Transposon-like element Lyt2-2 DNA (AHRD V3.3 *** D5MNY6_SOLLC)


Gene families : OG_42_0000075 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000075_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Solanum release: Solyc07g042600
Cluster HCCA clusters: Cluster_302

Target Alias Description ECC score Gene Family Method Actions
Bradi2g25465 No alias FAR1-related sequence 5 0.02 Orthogroups_2024-Update
Bradi4g21862 No alias FAR1-related sequence 5 0.01 Orthogroups_2024-Update
Brara.H01299.1 No alias FRS/FRF-type transcription factor 0.03 Orthogroups_2024-Update
Glyma.04G193200 No alias FAR1-related sequence 5 0.03 Orthogroups_2024-Update
LOC_Os02g06820 No alias transposon protein, putative, unclassified, expressed 0.02 Orthogroups_2024-Update
Solyc06g068200 No alias Far1-related sequence 6 (AHRD V3.3 *** A0A061G8J5_THECC) 0.03 Orthogroups_2024-Update
Sopen08g015980 No alias FAR1 DNA-binding domain 0.03 Orthogroups_2024-Update

Type GO Term Name Evidence Source

No GO annotation available for this sequence
Toggle parental
Type GO Term Name Evidence Source
MF GO:0008107 galactoside 2-alpha-L-fucosyltransferase activity IEP Predicted GO
MF GO:0008252 nucleotidase activity IEP Predicted GO
MF GO:0008253 5'-nucleotidase activity IEP Predicted GO
MF GO:0008417 fucosyltransferase activity IEP Predicted GO
BP GO:0009262 deoxyribonucleotide metabolic process IEP Predicted GO
BP GO:0009264 deoxyribonucleotide catabolic process IEP Predicted GO
MF GO:0031127 alpha-(1,2)-fucosyltransferase activity IEP Predicted GO
BP GO:0042546 cell wall biogenesis IEP Predicted GO
InterPro domains Description Start Stop
IPR018289 MULE_transposase_dom 303 397
No external refs found!