LOC_Os02g47140

Description : L11 domain containing ribosomal protein, putative, expressed

Gene families : OG_42_0001717 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0001717_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	Oryza release: LOC_Os02g47140
Cluster	HCCA clusters: cluster_0084

Target	Alias	Description	ECC score	Gene Family Method
227409	No alias	Ribosomal protein L11 family protein	0.04	Orthogroups_2024-Update
A4A49_58419	No alias	60s ribosomal protein l12	0.03	Orthogroups_2024-Update
AC196489.3_FG002	No alias	Ribosomal protein L11 family protein	0.03	Orthogroups_2024-Update
At5g60670	No alias	60S ribosomal protein L12-3...	0.02	Orthogroups_2024-Update
Bradi3g52460	No alias	Ribosomal protein L11 family protein	0.04	Orthogroups_2024-Update
Bradi5g20330	No alias	Ribosomal protein L11 family protein	0.02	Orthogroups_2024-Update
Brara.D00531.1	No alias	component *(uL11) of large ribosomal-subunit (LSU) proteome	0.04	Orthogroups_2024-Update
Brara.D02258.1	No alias	component *(uL11) of large ribosomal-subunit (LSU) proteome	0.06	Orthogroups_2024-Update
Brara.G01587.1	No alias	component *(uL11) of large ribosomal-subunit (LSU) proteome	0.03	Orthogroups_2024-Update
Cre12.g528750	No alias	Ribosomal protein L11 family protein	0.02	Orthogroups_2024-Update
GRMZM2G054201	No alias	Ribosomal protein L11 family protein	0.04	Orthogroups_2024-Update
GRMZM2G121075	No alias	Ribosomal protein L11 family protein	0.02	Orthogroups_2024-Update
GRMZM2G438814	No alias	Ribosomal protein L11 family protein	0.02	Orthogroups_2024-Update
Glyma.10G053100	No alias	Ribosomal protein L11 family protein	0.08	Orthogroups_2024-Update
Glyma.11G146300	No alias	Ribosomal protein L11 family protein	0.03	Orthogroups_2024-Update
Glyma.12G075500	No alias	Ribosomal protein L11 family protein	0.04	Orthogroups_2024-Update
Glyma.13G140100	No alias	Ribosomal protein L11 family protein	0.03	Orthogroups_2024-Update
HORVU2Hr1G102610.1	No alias	component *(uL11) of large ribosomal-subunit (LSU) proteome	0.04	Orthogroups_2024-Update
HORVU6Hr1G067870.1	No alias	component *(uL11) of large ribosomal-subunit (LSU) proteome	0.04	Orthogroups_2024-Update
Mp3g02020.1	No alias	component RPL12 of LSU proteome component	0.02	Orthogroups_2024-Update
Pp1s104_128V6	No alias	60s ribosomal protein l12	0.04	Orthogroups_2024-Update
Pp1s14_191V6	No alias	60s ribosomal protein l12	0.02	Orthogroups_2024-Update
Pp1s242_7V6	No alias	60s ribosomal protein l12	0.02	Orthogroups_2024-Update
Pp1s78_212V6	No alias	60s ribosomal protein l12	0.06	Orthogroups_2024-Update
Seita.1G284700.1	No alias	component *(uL11) of large ribosomal-subunit (LSU) proteome	0.04	Orthogroups_2024-Update
Seita.7G078800.1	No alias	component *(uL11) of large ribosomal-subunit (LSU) proteome	0.07	Orthogroups_2024-Update
Seita.7G222200.1	No alias	component *(uL11) of large ribosomal-subunit (LSU) proteome	0.07	Orthogroups_2024-Update
Sobic.004G271400.1	No alias	component *(uL11) of large ribosomal-subunit (LSU) proteome	0.04	Orthogroups_2024-Update
Sobic.006G057200.1	No alias	component *(uL11) of large ribosomal-subunit (LSU) proteome	0.06	Orthogroups_2024-Update
Sobic.006G201500.1	No alias	component *(uL11) of large ribosomal-subunit (LSU) proteome	0.05	Orthogroups_2024-Update
Solyc11g065670	No alias	60S ribosomal protein L12 (AHRD V3.3 *** Q6RJY1_CAPAN)	0.05	Orthogroups_2024-Update
Sopen11g025410	No alias	Ribosomal protein L11, N-terminal domain	0.05	Orthogroups_2024-Update
evm.model.contig_2343.1	No alias	(at5g60670 : 215.0) Ribosomal protein L11 family...	0.06	Orthogroups_2024-Update
evm.model.tig00001339.27	No alias	(at5g60670 : 218.0) Ribosomal protein L11 family...	0.02	Orthogroups_2024-Update

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003735	structural constituent of ribosome	IEA	InterProScan predictions
MF	GO:0005198	structural molecule activity	None	Extended
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005840	ribosome	IEA	InterProScan predictions
BP	GO:0006412	translation	IEA	InterProScan predictions
BP	GO:0006518	peptide metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009058	biosynthetic process	None	Extended
BP	GO:0009059	macromolecule biosynthetic process	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0019538	protein metabolic process	None	Extended
CC	GO:0032991	protein-containing complex	None	Extended
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
BP	GO:0034645	cellular macromolecule biosynthetic process	None	Extended
BP	GO:0043043	peptide biosynthetic process	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
CC	GO:0043226	organelle	None	Extended
CC	GO:0043228	non-membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043232	intracellular non-membrane-bounded organelle	None	Extended
BP	GO:0043603	cellular amide metabolic process	None	Extended
BP	GO:0043604	amide biosynthetic process	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0044249	cellular biosynthetic process	None	Extended
BP	GO:0044260	cellular macromolecule metabolic process	None	Extended
BP	GO:0044267	cellular protein metabolic process	None	Extended
BP	GO:0044271	cellular nitrogen compound biosynthetic process	None	Extended
CC	GO:0044424	intracellular part	None	Extended
CC	GO:0044444	cytoplasmic part	None	Extended
CC	GO:0044464	cell part	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:1901564	organonitrogen compound metabolic process	None	Extended
BP	GO:1901566	organonitrogen compound biosynthetic process	None	Extended
BP	GO:1901576	organic substance biosynthetic process	None	Extended
CC	GO:1990904	ribonucleoprotein complex	None	Extended

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Type	GO Term	Name	Evidence	Source
CC	GO:0000139	Golgi membrane	IEP	Predicted GO
MF	GO:0003697	single-stranded DNA binding	IEP	Predicted GO
MF	GO:0004435	phosphatidylinositol phospholipase C activity	IEP	Predicted GO
MF	GO:0004525	ribonuclease III activity	IEP	Predicted GO
MF	GO:0004620	phospholipase activity	IEP	Predicted GO
MF	GO:0004629	phospholipase C activity	IEP	Predicted GO
MF	GO:0005338	nucleotide-sugar transmembrane transporter activity	IEP	Predicted GO
CC	GO:0005622	intracellular	IEP	Predicted GO
CC	GO:0005730	nucleolus	IEP	Predicted GO
CC	GO:0005741	mitochondrial outer membrane	IEP	Predicted GO
CC	GO:0005875	microtubule associated complex	IEP	Predicted GO
BP	GO:0006338	chromatin remodeling	IEP	Predicted GO
BP	GO:0006396	RNA processing	IEP	Predicted GO
MF	GO:0008081	phosphoric diester hydrolase activity	IEP	Predicted GO
BP	GO:0009690	cytokinin metabolic process	IEP	Predicted GO
BP	GO:0010817	regulation of hormone levels	IEP	Predicted GO
MF	GO:0015165	pyrimidine nucleotide-sugar transmembrane transporter activity	IEP	Predicted GO
BP	GO:0015780	nucleotide-sugar transmembrane transport	IEP	Predicted GO
BP	GO:0015931	nucleobase-containing compound transport	IEP	Predicted GO
MF	GO:0015932	nucleobase-containing compound transmembrane transporter activity	IEP	Predicted GO
MF	GO:0016298	lipase activity	IEP	Predicted GO
MF	GO:0016645	oxidoreductase activity, acting on the CH-NH group of donors	IEP	Predicted GO
MF	GO:0019139	cytokinin dehydrogenase activity	IEP	Predicted GO
CC	GO:0019867	outer membrane	IEP	Predicted GO
BP	GO:0022613	ribonucleoprotein complex biogenesis	IEP	Predicted GO
CC	GO:0030286	dynein complex	IEP	Predicted GO
CC	GO:0031090	organelle membrane	IEP	Predicted GO
CC	GO:0031966	mitochondrial membrane	IEP	Predicted GO
CC	GO:0031968	organelle outer membrane	IEP	Predicted GO
MF	GO:0032296	double-stranded RNA-specific ribonuclease activity	IEP	Predicted GO
BP	GO:0034728	nucleosome organization	IEP	Predicted GO
BP	GO:0034754	cellular hormone metabolic process	IEP	Predicted GO
BP	GO:0042254	ribosome biogenesis	IEP	Predicted GO
BP	GO:0042445	hormone metabolic process	IEP	Predicted GO
BP	GO:0043044	ATP-dependent chromatin remodeling	IEP	Predicted GO
BP	GO:0043486	histone exchange	IEP	Predicted GO
BP	GO:0044085	cellular component biogenesis	IEP	Predicted GO
CC	GO:0044422	organelle part	IEP	Predicted GO
CC	GO:0044446	intracellular organelle part	IEP	Predicted GO
BP	GO:0071824	protein-DNA complex subunit organization	IEP	Predicted GO
BP	GO:0071840	cellular component organization or biogenesis	IEP	Predicted GO
BP	GO:0090481	pyrimidine nucleotide-sugar transmembrane transport	IEP	Predicted GO
CC	GO:0098588	bounding membrane of organelle	IEP	Predicted GO
CC	GO:0098805	whole membrane	IEP	Predicted GO
BP	GO:1901264	carbohydrate derivative transport	IEP	Predicted GO
MF	GO:1901505	carbohydrate derivative transmembrane transporter activity	IEP	Predicted GO

InterPro domains	Description	Start	Stop
IPR020783	Ribosomal_L11_C	75	144
IPR020784	Ribosomal_L11_N	13	70

External Links

No external refs found!

LOC_Os02g47140

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation