1. Home
  2. Species
  3. Solanum lycopersicum
  4. Sequence
  5. Solyc01g080600

Solyc01g080600


Description : Histone H3 (AHRD V3.3 *** A0A068VC55_COFCA)


Gene families : OG_42_0000090 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000090_tree

Sequence : coding (download), protein (download)


Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Solanum release: Solyc01g080600
Cluster HCCA clusters: Cluster_77

Target Alias Description ECC score Gene Family Method Actions
103546 No alias Histone superfamily protein 0.03 Orthogroups_2024-Update
269004 No alias Histone superfamily protein 0.02 Orthogroups_2024-Update
438193 No alias Histone superfamily protein 0.03 Orthogroups_2024-Update
78992 No alias Histone superfamily protein 0.02 Orthogroups_2024-Update
A4A49_56508 No alias histone h3.2 0.06 Orthogroups_2024-Update
A4A49_57080 No alias histone h3.2 0.06 Orthogroups_2024-Update
A4A49_61103 No alias histone h3.2 0.05 Orthogroups_2024-Update
At1g09200 No alias Histone H3 [Source:UniProtKB/TrEMBL;Acc:A0A178WG20] 0.03 Orthogroups_2024-Update
At5g65360 No alias Histone H3 [Source:UniProtKB/TrEMBL;Acc:A0A178WG20] 0.04 Orthogroups_2024-Update
Bradi1g49997 No alias Histone superfamily protein 0.03 Orthogroups_2024-Update
Bradi2g27720 No alias Histone superfamily protein 0.02 Orthogroups_2024-Update
Brara.B00354.1 No alias histone *(H3) 0.07 Orthogroups_2024-Update
Brara.B03430.1 No alias histone *(H3) 0.07 Orthogroups_2024-Update
Brara.C00416.1 No alias histone *(H3) 0.04 Orthogroups_2024-Update
Brara.D00649.1 No alias histone *(H3) 0.08 Orthogroups_2024-Update
Brara.H02834.1 No alias histone *(H3) 0.07 Orthogroups_2024-Update
Brara.I00815.1 No alias histone *(H3) 0.03 Orthogroups_2024-Update
Brara.I01745.1 No alias histone *(H3) 0.07 Orthogroups_2024-Update
Brara.J02314.1 No alias histone *(H3) 0.05 Orthogroups_2024-Update
Brara.J02315.1 No alias histone *(H3) 0.03 Orthogroups_2024-Update
Cre06.g264650 No alias Histone superfamily protein 0.03 Orthogroups_2024-Update
Cre06.g265250 No alias Histone superfamily protein 0.03 Orthogroups_2024-Update
Cre06.g267950 No alias Histone superfamily protein 0.02 Orthogroups_2024-Update
Cre06.g274000 No alias Histone superfamily protein 0.03 Orthogroups_2024-Update
Cre06.g274850 No alias Histone superfamily protein 0.03 Orthogroups_2024-Update
Cre06.g276600 No alias Histone superfamily protein 0.03 Orthogroups_2024-Update
Cre06.g276850 No alias Histone superfamily protein 0.04 Orthogroups_2024-Update
Cre12.g504650 No alias Histone superfamily protein 0.03 Orthogroups_2024-Update
Cre12.g504800 No alias Histone superfamily protein 0.03 Orthogroups_2024-Update
Cre12.g505500 No alias Histone superfamily protein 0.01 Orthogroups_2024-Update
Cre12.g506300 No alias Histone superfamily protein 0.04 Orthogroups_2024-Update
Cre12.g506500 No alias Histone superfamily protein 0.04 Orthogroups_2024-Update
Cre13.g569950 No alias Histone superfamily protein 0.01 Orthogroups_2024-Update
Cre16.g661450 No alias Histone superfamily protein 0.04 Orthogroups_2024-Update
Cre17.g708150 No alias Histone superfamily protein 0.06 Orthogroups_2024-Update
Cre17.g708700 No alias Histone superfamily protein 0.03 Orthogroups_2024-Update
Cre17.g709050 No alias Histone superfamily protein 0.02 Orthogroups_2024-Update
GRMZM2G078314 No alias Histone superfamily protein 0.05 Orthogroups_2024-Update
GRMZM2G130079 No alias Histone superfamily protein 0.04 Orthogroups_2024-Update
GRMZM2G171387 No alias Histone superfamily protein 0.03 Orthogroups_2024-Update
GRMZM2G176358 No alias Histone superfamily protein 0.03 Orthogroups_2024-Update
GRMZM2G179005 No alias Histone superfamily protein 0.04 Orthogroups_2024-Update
GRMZM2G355773 No alias Histone superfamily protein 0.03 Orthogroups_2024-Update
GRMZM2G418258 No alias Histone superfamily protein 0.03 Orthogroups_2024-Update
Glyma.05G188600 No alias Histone superfamily protein 0.03 Orthogroups_2024-Update
Glyma.05G188700 No alias Histone superfamily protein 0.05 Orthogroups_2024-Update
Glyma.07G202500 No alias Histone superfamily protein 0.06 Orthogroups_2024-Update
Glyma.08G227400 No alias Histone superfamily protein 0.06 Orthogroups_2024-Update
Glyma.08G245000 No alias Histone superfamily protein 0.04 Orthogroups_2024-Update
Glyma.11G130900 No alias Histone superfamily protein 0.06 Orthogroups_2024-Update
Glyma.12G055200 No alias Histone superfamily protein 0.03 Orthogroups_2024-Update
Glyma.13G173100 No alias Histone superfamily protein 0.04 Orthogroups_2024-Update
Glyma.13G342000 No alias Histone superfamily protein 0.06 Orthogroups_2024-Update
Glyma.15G032300 No alias Histone superfamily protein 0.06 Orthogroups_2024-Update
Glyma.15G222200 No alias Histone superfamily protein 0.05 Orthogroups_2024-Update
Glyma.17G255602 No alias Histone superfamily protein 0.03 Orthogroups_2024-Update
Glyma.18G266200 No alias Histone superfamily protein 0.07 Orthogroups_2024-Update
HORVU1Hr1G058490.4 No alias histone *(H3) 0.02 Orthogroups_2024-Update
HORVU2Hr1G090210.1 No alias histone *(H3) 0.05 Orthogroups_2024-Update
HORVU4Hr1G073150.1 No alias histone *(H3) 0.06 Orthogroups_2024-Update
HORVU6Hr1G031580.1 No alias histone *(H3) 0.03 Orthogroups_2024-Update
HORVU7Hr1G012820.2 No alias histone *(H3) 0.05 Orthogroups_2024-Update
HORVU7Hr1G033030.1 No alias histone *(H3) 0.05 Orthogroups_2024-Update
Kfl00053_0050 kfl00053_0050_v1.1 (p08437|h3_volca : 147.0) Histone H3 - Volvox carteri &... 0.03 Orthogroups_2024-Update
Kfl00240_g18 kfl00240_g18_v1.1 (at5g10980 : 254.0) Histone superfamily protein;... 0.02 Orthogroups_2024-Update
Kfl00417_0090 kfl00417_0090_v1.1 (at5g10980 : 254.0) Histone superfamily protein;... 0.01 Orthogroups_2024-Update
MA_222556g0010 No alias (at5g65360 : 149.0) Histone superfamily protein;... 0.02 Orthogroups_2024-Update
MA_561217g0010 No alias (at5g65360 : 228.0) Histone superfamily protein;... 0.03 Orthogroups_2024-Update
MA_56411g0010 No alias (at5g65360 : 262.0) Histone superfamily protein;... 0.05 Orthogroups_2024-Update
MA_74555g0010 No alias (at5g65360 : 127.0) Histone superfamily protein;... 0.04 Orthogroups_2024-Update
Mp3g07730.1 No alias histone (H3) 0.02 Orthogroups_2024-Update
Mp3g09090.1 No alias histone (H3) 0.02 Orthogroups_2024-Update
Mp7g10730.1 No alias histone (H3) 0.03 Orthogroups_2024-Update
Mp7g16200.1 No alias histone (H3) 0.03 Orthogroups_2024-Update
Mp7g18030.1 No alias histone (H3) 0.02 Orthogroups_2024-Update
PSME_00017144-RA No alias (at5g10980 : 144.0) Histone superfamily protein;... 0.02 Orthogroups_2024-Update
Potri.001G016700 No alias Histone superfamily protein 0.03 Orthogroups_2024-Update
Potri.T159501 No alias Histone superfamily protein 0.02 Orthogroups_2024-Update
Pp1s12_93V6 No alias histone h3 0.02 Orthogroups_2024-Update
Seita.3G227400.1 No alias histone *(H3) 0.06 Orthogroups_2024-Update
Seita.4G066000.1 No alias histone *(H3) 0.04 Orthogroups_2024-Update
Sobic.004G170500.2 No alias histone *(H3) 0.04 Orthogroups_2024-Update
Sobic.006G076400.1 No alias histone *(H3) 0.03 Orthogroups_2024-Update
Sobic.006G081800.1 No alias histone *(H3) 0.05 Orthogroups_2024-Update
Sopen00g011880 No alias Core histone H2A/H2B/H3/H4 0.03 Orthogroups_2024-Update
Sopen01g030620 No alias Core histone H2A/H2B/H3/H4 0.1 Orthogroups_2024-Update
Sopen01g030790 No alias Core histone H2A/H2B/H3/H4 0.13 Orthogroups_2024-Update
Sopen01g032420 No alias Core histone H2A/H2B/H3/H4 0.09 Orthogroups_2024-Update
Sopen01g033540 No alias Core histone H2A/H2B/H3/H4 0.08 Orthogroups_2024-Update
Sopen01g033560 No alias Core histone H2A/H2B/H3/H4 0.12 Orthogroups_2024-Update
Sopen01g033790 No alias Core histone H2A/H2B/H3/H4 0.06 Orthogroups_2024-Update
Sopen01g033830 No alias Core histone H2A/H2B/H3/H4 0.11 Orthogroups_2024-Update
Sopen02g022390 No alias Core histone H2A/H2B/H3/H4 0.04 Orthogroups_2024-Update
Sopen10g004700 No alias Core histone H2A/H2B/H3/H4 0.06 Orthogroups_2024-Update
Sopen12g029140 No alias Core histone H2A/H2B/H3/H4 0.07 Orthogroups_2024-Update
evm.model.contig_2255.2 No alias (at5g10980 : 218.0) Histone superfamily protein;... 0.04 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0003677 DNA binding IEA InterProScan predictions
Toggle parental
Type GO Term Name Evidence Source
CC GO:0000151 ubiquitin ligase complex IEP Predicted GO
CC GO:0000152 nuclear ubiquitin ligase complex IEP Predicted GO
CC GO:0000786 nucleosome IEP Predicted GO
MF GO:0003682 chromatin binding IEP Predicted GO
MF GO:0004003 ATP-dependent DNA helicase activity IEP Predicted GO
MF GO:0005337 nucleoside transmembrane transporter activity IEP Predicted GO
CC GO:0005634 nucleus IEP Predicted GO
CC GO:0005680 anaphase-promoting complex IEP Predicted GO
BP GO:0006259 DNA metabolic process IEP Predicted GO
BP GO:0006260 DNA replication IEP Predicted GO
BP GO:0006270 DNA replication initiation IEP Predicted GO
BP GO:0006281 DNA repair IEP Predicted GO
BP GO:0006325 chromatin organization IEP Predicted GO
BP GO:0006334 nucleosome assembly IEP Predicted GO
BP GO:0006974 cellular response to DNA damage stimulus IEP Predicted GO
MF GO:0008026 ATP-dependent helicase activity IEP Predicted GO
MF GO:0008094 DNA-dependent ATPase activity IEP Predicted GO
MF GO:0015932 nucleobase-containing compound transmembrane transporter activity IEP Predicted GO
BP GO:0016458 gene silencing IEP Predicted GO
BP GO:0022607 cellular component assembly IEP Predicted GO
BP GO:0031047 gene silencing by RNA IEP Predicted GO
CC GO:0031461 cullin-RING ubiquitin ligase complex IEP Predicted GO
BP GO:0032957 inositol trisphosphate metabolic process IEP Predicted GO
CC GO:0032993 protein-DNA complex IEP Predicted GO
BP GO:0033554 cellular response to stress IEP Predicted GO
BP GO:0034622 cellular protein-containing complex assembly IEP Predicted GO
BP GO:0034728 nucleosome organization IEP Predicted GO
MF GO:0043138 3'-5' DNA helicase activity IEP Predicted GO
MF GO:0043140 ATP-dependent 3'-5' DNA helicase activity IEP Predicted GO
CC GO:0043226 organelle IEP Predicted GO
CC GO:0043227 membrane-bounded organelle IEP Predicted GO
CC GO:0043229 intracellular organelle IEP Predicted GO
CC GO:0043231 intracellular membrane-bounded organelle IEP Predicted GO
BP GO:0043647 inositol phosphate metabolic process IEP Predicted GO
BP GO:0043933 protein-containing complex subunit organization IEP Predicted GO
CC GO:0044424 intracellular part IEP Predicted GO
CC GO:0044427 chromosomal part IEP Predicted GO
CC GO:0044464 cell part IEP Predicted GO
CC GO:0044815 DNA packaging complex IEP Predicted GO
MF GO:0047325 inositol tetrakisphosphate 1-kinase activity IEP Predicted GO
MF GO:0047429 nucleoside-triphosphate diphosphatase activity IEP Predicted GO
BP GO:0051716 cellular response to stimulus IEP Predicted GO
MF GO:0051765 inositol tetrakisphosphate kinase activity IEP Predicted GO
MF GO:0051766 inositol trisphosphate kinase activity IEP Predicted GO
MF GO:0052725 inositol-1,3,4-trisphosphate 6-kinase activity IEP Predicted GO
MF GO:0052726 inositol-1,3,4-trisphosphate 5-kinase activity IEP Predicted GO
BP GO:0065003 protein-containing complex assembly IEP Predicted GO
BP GO:0065004 protein-DNA complex assembly IEP Predicted GO
MF GO:0070035 purine NTP-dependent helicase activity IEP Predicted GO
BP GO:0071824 protein-DNA complex subunit organization IEP Predicted GO
BP GO:0090304 nucleic acid metabolic process IEP Predicted GO
MF GO:1901505 carbohydrate derivative transmembrane transporter activity IEP Predicted GO
InterPro domains Description Start Stop
IPR007125 Histone_H2A/H2B/H3 1 132
No external refs found!