1. Home
  2. Species
  3. Oryza sativa
  4. Sequence
  5. LOC_Os02g51040

LOC_Os02g51040


Description : expansin precursor, putative, expressed


Gene families : OG_42_0000014 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000014_tree

Sequence : coding (download), protein (download)


Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Oryza release: LOC_Os02g51040
Cluster HCCA clusters: cluster_0076

Target Alias Description ECC score Gene Family Method Actions
409954 No alias expansin A8 0.02 Orthogroups_2024-Update
90332 No alias Barwin-like endoglucanases superfamily protein 0.02 Orthogroups_2024-Update
A4A49_04302 No alias expansin-a10 0.03 Orthogroups_2024-Update
At1g20190 No alias Expansin-A11 [Source:UniProtKB/Swiss-Prot;Acc:Q9LNU3] 0.02 Orthogroups_2024-Update
At1g69530 No alias AT1G69530 protein [Source:UniProtKB/TrEMBL;Acc:C0Z241] 0.03 Orthogroups_2024-Update
At5g05290 No alias Expansin-A2 [Source:UniProtKB/Swiss-Prot;Acc:Q38866] 0.02 Orthogroups_2024-Update
At5g39270 No alias Expansin-A22 [Source:UniProtKB/Swiss-Prot;Acc:Q9FL80] 0.03 Orthogroups_2024-Update
Bradi2g22290 No alias expansin A1 0.02 Orthogroups_2024-Update
Bradi2g53580 No alias expansin A8 0.03 Orthogroups_2024-Update
Bradi3g09950 No alias expansin 11 0.02 Orthogroups_2024-Update
Bradi5g04120 No alias expansin 11 0.03 Orthogroups_2024-Update
Brara.C00061.1 No alias alpha-class expansin 0.03 Orthogroups_2024-Update
Brara.C02080.1 No alias alpha-class expansin 0.02 Orthogroups_2024-Update
Brara.D00393.1 No alias alpha-class expansin 0.03 Orthogroups_2024-Update
Brara.G02887.1 No alias alpha-class expansin 0.03 Orthogroups_2024-Update
Brara.I03802.1 No alias alpha-class expansin 0.03 Orthogroups_2024-Update
Brara.J02891.1 No alias alpha-class expansin 0.02 Orthogroups_2024-Update
Glyma.06G143300 No alias expansin A8 0.03 Orthogroups_2024-Update
Glyma.06G195000 No alias expansin A15 0.02 Orthogroups_2024-Update
Glyma.07G229000 No alias expansin A15 0.02 Orthogroups_2024-Update
Glyma.15G037700 No alias expansin A4 0.03 Orthogroups_2024-Update
Glyma.18G265400 No alias expansin A23 0.03 Orthogroups_2024-Update
HORVU6Hr1G075970.1 No alias alpha-class expansin 0.02 Orthogroups_2024-Update
LOC_Os01g14650 No alias expansin precursor, putative, expressed 0.03 Orthogroups_2024-Update
MA_10377235g0010 No alias (at2g40610 : 412.0) member of Alpha-Expansin Gene... 0.02 Orthogroups_2024-Update
MA_75790g0010 No alias (at5g05290 : 306.0) Encodes an expansin. Naming... 0.02 Orthogroups_2024-Update
MA_792493g0010 No alias (at1g69530 : 351.0) Member of Alpha-Expansin Gene... 0.03 Orthogroups_2024-Update
Mp2g18610.1 No alias alpha-class expansin 0.02 Orthogroups_2024-Update
Mp3g10160.1 No alias alpha-class expansin 0.02 Orthogroups_2024-Update
Mp8g18860.1 No alias alpha-class expansin 0.02 Orthogroups_2024-Update
PSME_00000910-RA No alias (at5g05290 : 323.0) Encodes an expansin. Naming... 0.02 Orthogroups_2024-Update
PSME_00018428-RA No alias (q40636|expa2_orysa : 402.0) Expansin-A2 precursor... 0.03 Orthogroups_2024-Update
PSME_00018430-RA No alias (at2g40610 : 404.0) member of Alpha-Expansin Gene... 0.03 Orthogroups_2024-Update
PSME_00025835-RA No alias (at1g26770 : 394.0) Encodes an expansin. Naming... 0.02 Orthogroups_2024-Update
PSME_00025836-RA No alias (at2g40610 : 399.0) member of Alpha-Expansin Gene... 0.02 Orthogroups_2024-Update
PSME_00029310-RA No alias (at1g26770 : 386.0) Encodes an expansin. Naming... 0.02 Orthogroups_2024-Update
PSME_00052085-RA No alias (at1g69530 : 372.0) Member of Alpha-Expansin Gene... 0.04 Orthogroups_2024-Update
Potri.004G123200 No alias expansin A1 0.02 Orthogroups_2024-Update
Pp1s246_53V6 No alias alpha-expansin 1 0.02 Orthogroups_2024-Update
Pp1s325_11V6 No alias expa6 gene for putative alpha expansin protein family EXPA6 0.02 Orthogroups_2024-Update
Pp1s75_122V6 No alias expansin 2 0.02 Orthogroups_2024-Update
Seita.1G318000.1 No alias alpha-class expansin 0.02 Orthogroups_2024-Update
Seita.7G029300.1 No alias alpha-class expansin 0.04 Orthogroups_2024-Update
Sobic.001G033300.1 No alias alpha-class expansin 0.02 Orthogroups_2024-Update
Sobic.004G121700.1 No alias alpha-class expansin 0.02 Orthogroups_2024-Update
Sobic.004G121900.1 No alias alpha-class expansin 0.02 Orthogroups_2024-Update
Sobic.004G238801.1 No alias alpha-class expansin 0.01 Orthogroups_2024-Update
Sopen02g032810 No alias Pollen allergen 0.02 Orthogroups_2024-Update
Sopen09g005600 No alias Pollen allergen 0.02 Orthogroups_2024-Update

Type GO Term Name Evidence Source

No GO annotation available for this sequence
Toggle parental
Type GO Term Name Evidence Source
BP GO:0000041 transition metal ion transport IEP Predicted GO
MF GO:0000166 nucleotide binding IEP Predicted GO
BP GO:0000350 generation of catalytic spliceosome for second transesterification step IEP Predicted GO
CC GO:0000930 gamma-tubulin complex IEP Predicted GO
CC GO:0000931 gamma-tubulin large complex IEP Predicted GO
MF GO:0003700 DNA-binding transcription factor activity IEP Predicted GO
MF GO:0003714 transcription corepressor activity IEP Predicted GO
MF GO:0003905 alkylbase DNA N-glycosylase activity IEP Predicted GO
MF GO:0003924 GTPase activity IEP Predicted GO
MF GO:0004601 peroxidase activity IEP Predicted GO
MF GO:0004672 protein kinase activity IEP Predicted GO
CC GO:0005758 mitochondrial intermembrane space IEP Predicted GO
CC GO:0005875 microtubule associated complex IEP Predicted GO
BP GO:0006284 base-excision repair IEP Predicted GO
BP GO:0006355 regulation of transcription, DNA-templated IEP Predicted GO
BP GO:0006464 cellular protein modification process IEP Predicted GO
BP GO:0006468 protein phosphorylation IEP Predicted GO
BP GO:0006793 phosphorus metabolic process IEP Predicted GO
BP GO:0006796 phosphate-containing compound metabolic process IEP Predicted GO
BP GO:0006825 copper ion transport IEP Predicted GO
BP GO:0006950 response to stress IEP Predicted GO
BP GO:0006979 response to oxidative stress IEP Predicted GO
BP GO:0007021 tubulin complex assembly IEP Predicted GO
BP GO:0007023 post-chaperonin tubulin folding pathway IEP Predicted GO
MF GO:0008081 phosphoric diester hydrolase activity IEP Predicted GO
CC GO:0008274 gamma-tubulin ring complex IEP Predicted GO
MF GO:0008725 DNA-3-methyladenine glycosylase activity IEP Predicted GO
BP GO:0009889 regulation of biosynthetic process IEP Predicted GO
BP GO:0010468 regulation of gene expression IEP Predicted GO
BP GO:0010556 regulation of macromolecule biosynthetic process IEP Predicted GO
MF GO:0016209 antioxidant activity IEP Predicted GO
MF GO:0016301 kinase activity IEP Predicted GO
BP GO:0016310 phosphorylation IEP Predicted GO
MF GO:0016530 metallochaperone activity IEP Predicted GO
MF GO:0016531 copper chaperone activity IEP Predicted GO
MF GO:0016684 oxidoreductase activity, acting on peroxide as acceptor IEP Predicted GO
MF GO:0016772 transferase activity, transferring phosphorus-containing groups IEP Predicted GO
MF GO:0016773 phosphotransferase activity, alcohol group as acceptor IEP Predicted GO
MF GO:0017076 purine nucleotide binding IEP Predicted GO
MF GO:0019104 DNA N-glycosylase activity IEP Predicted GO
BP GO:0019219 regulation of nucleobase-containing compound metabolic process IEP Predicted GO
BP GO:0019222 regulation of metabolic process IEP Predicted GO
BP GO:0019538 protein metabolic process IEP Predicted GO
BP GO:0022607 cellular component assembly IEP Predicted GO
BP GO:0022618 ribonucleoprotein complex assembly IEP Predicted GO
CC GO:0030286 dynein complex IEP Predicted GO
MF GO:0030554 adenyl nucleotide binding IEP Predicted GO
BP GO:0031323 regulation of cellular metabolic process IEP Predicted GO
BP GO:0031326 regulation of cellular biosynthetic process IEP Predicted GO
BP GO:0031503 protein-containing complex localization IEP Predicted GO
CC GO:0031970 organelle envelope lumen IEP Predicted GO
CC GO:0031974 membrane-enclosed lumen IEP Predicted GO
MF GO:0032553 ribonucleotide binding IEP Predicted GO
MF GO:0032555 purine ribonucleotide binding IEP Predicted GO
MF GO:0032559 adenyl ribonucleotide binding IEP Predicted GO
BP GO:0033566 gamma-tubulin complex localization IEP Predicted GO
BP GO:0034613 cellular protein localization IEP Predicted GO
BP GO:0034622 cellular protein-containing complex assembly IEP Predicted GO
BP GO:0034629 cellular protein-containing complex localization IEP Predicted GO
MF GO:0035639 purine ribonucleoside triphosphate binding IEP Predicted GO
MF GO:0036094 small molecule binding IEP Predicted GO
BP GO:0036211 protein modification process IEP Predicted GO
MF GO:0043168 anion binding IEP Predicted GO
CC GO:0043233 organelle lumen IEP Predicted GO
BP GO:0043412 macromolecule modification IEP Predicted GO
MF GO:0043733 DNA-3-methylbase glycosylase activity IEP Predicted GO
BP GO:0043933 protein-containing complex subunit organization IEP Predicted GO
BP GO:0044267 cellular protein metabolic process IEP Predicted GO
CC GO:0044422 organelle part IEP Predicted GO
CC GO:0044430 cytoskeletal part IEP Predicted GO
CC GO:0044446 intracellular organelle part IEP Predicted GO
CC GO:0044450 microtubule organizing center part IEP Predicted GO
MF GO:0048487 beta-tubulin binding IEP Predicted GO
BP GO:0050896 response to stimulus IEP Predicted GO
BP GO:0051171 regulation of nitrogen compound metabolic process IEP Predicted GO
BP GO:0051252 regulation of RNA metabolic process IEP Predicted GO
BP GO:0060255 regulation of macromolecule metabolic process IEP Predicted GO
BP GO:0065003 protein-containing complex assembly IEP Predicted GO
CC GO:0070013 intracellular organelle lumen IEP Predicted GO
BP GO:0070727 cellular macromolecule localization IEP Predicted GO
BP GO:0071826 ribonucleoprotein complex subunit organization IEP Predicted GO
BP GO:0080090 regulation of primary metabolic process IEP Predicted GO
MF GO:0097367 carbohydrate derivative binding IEP Predicted GO
MF GO:0140104 molecular carrier activity IEP Predicted GO
MF GO:0140110 transcription regulator activity IEP Predicted GO
MF GO:1901265 nucleoside phosphate binding IEP Predicted GO
BP GO:1903506 regulation of nucleic acid-templated transcription IEP Predicted GO
BP GO:2000112 regulation of cellular macromolecule biosynthetic process IEP Predicted GO
BP GO:2001141 regulation of RNA biosynthetic process IEP Predicted GO
InterPro domains Description Start Stop
IPR007117 Expansin_CBD 198 276
IPR009009 RlpA-like_DPBB 99 187
No external refs found!