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  5. LOC_Os02g53050

LOC_Os02g53050


Description : tetratricopeptide-like helical, putative, expressed


Gene families : OG_42_0000001 (Orthogroups_2024-Update) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Oryza release: LOC_Os02g53050
Cluster HCCA clusters: cluster_0126

Target Alias Description ECC score Gene Family Method Actions
At4g14170 No alias Pentatricopeptide repeat-containing protein At4g14170... 0.03 Orthogroups_2024-Update
Bradi1g75980 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.03 Orthogroups_2024-Update
Brara.A01167.1 No alias RNA editing factor *(DEK36) 0.03 Orthogroups_2024-Update
GRMZM2G170896 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.02 Orthogroups_2024-Update
Glyma.03G073766 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.03 Orthogroups_2024-Update
LOC_Os05g33920 No alias pentatricopeptide, putative, expressed 0.02 Orthogroups_2024-Update
PSME_00044695-RA No alias (at2g22070 : 545.0) pentatricopeptide (PPR)... 0.04 Orthogroups_2024-Update
PSME_00051747-RA No alias (at1g11290 : 641.0) Pentatricopeptide Repeat Protein... 0.02 Orthogroups_2024-Update
Potri.006G244500 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.02 Orthogroups_2024-Update
Seita.1G102000.1 No alias Unknown function 0.03 Orthogroups_2024-Update
Seita.4G100100.1 No alias Unknown function 0.03 Orthogroups_2024-Update
Seita.8G121200.1 No alias Unknown function 0.03 Orthogroups_2024-Update
evm.model.tig00001038.5 No alias no hits & (original description: no original description) 0.01 Orthogroups_2024-Update

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
CC GO:0000145 exocyst IEP Predicted GO
BP GO:0006887 exocytosis IEP Predicted GO
BP GO:0016579 protein deubiquitination IEP Predicted GO
MF GO:0019783 ubiquitin-like protein-specific protease activity IEP Predicted GO
BP GO:0032940 secretion by cell IEP Predicted GO
MF GO:0036459 thiol-dependent ubiquitinyl hydrolase activity IEP Predicted GO
MF GO:0042393 histone binding IEP Predicted GO
CC GO:0044448 cell cortex part IEP Predicted GO
BP GO:0046903 secretion IEP Predicted GO
BP GO:0070646 protein modification by small protein removal IEP Predicted GO
BP GO:0070647 protein modification by small protein conjugation or removal IEP Predicted GO
MF GO:0101005 ubiquitinyl hydrolase activity IEP Predicted GO
InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 170 196
IPR002885 Pentatricopeptide_repeat 275 300
IPR002885 Pentatricopeptide_repeat 375 399
IPR002885 Pentatricopeptide_repeat 199 247
IPR002885 Pentatricopeptide_repeat 301 348
No external refs found!