LOC_Os02g54030


Description : polygalacturonase, putative, expressed


Gene families : OG_42_0000259 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000259_tree

Sequence : coding (download), protein (download)


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Oryza release: LOC_Os02g54030
Cluster HCCA clusters: cluster_0049

Target Alias Description ECC score Gene Family Method Actions
Bradi1g53430 No alias Pectin lyase-like superfamily protein 0.02 Orthogroups_2024-Update
GRMZM2G348602 No alias Pectin lyase-like superfamily protein 0.02 Orthogroups_2024-Update
Solyc05g049980 No alias Pectin lyase-like superfamily protein (AHRD V3.3 *** AT3G61490.4) 0.03 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0004650 polygalacturonase activity IEA InterProScan predictions
BP GO:0005975 carbohydrate metabolic process IEA InterProScan predictions
Type GO Term Name Evidence Source
CC GO:0000502 proteasome complex IEP Predicted GO
MF GO:0004602 glutathione peroxidase activity IEP Predicted GO
BP GO:0009894 regulation of catabolic process IEP Predicted GO
BP GO:0042176 regulation of protein catabolic process IEP Predicted GO
CC GO:1905368 peptidase complex IEP Predicted GO
CC GO:1905369 endopeptidase complex IEP Predicted GO
MF GO:2001070 starch binding IEP Predicted GO
InterPro domains Description Start Stop
IPR000743 Glyco_hydro_28 4 234
No external refs found!