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  5. LOC_Os02g54470

LOC_Os02g54470


Description : 60S ribosomal protein L35a-3, putative, expressed


Gene families : OG_42_0001366 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0001366_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Oryza release: LOC_Os02g54470
Cluster HCCA clusters: cluster_0120

Target Alias Description ECC score Gene Family Method Actions
Brara.B02119.1 No alias component *(eL33) of large ribosomal-subunit (LSU) proteome 0.03 Orthogroups_2024-Update
Brara.G02281.1 No alias component *(eL33) of large ribosomal-subunit (LSU) proteome 0.03 Orthogroups_2024-Update
Brara.G03191.1 No alias component *(eL33) of large ribosomal-subunit (LSU) proteome 0.07 Orthogroups_2024-Update
Brara.I03824.1 No alias component *(eL33) of large ribosomal-subunit (LSU) proteome 0.08 Orthogroups_2024-Update
Cre10.g459250 No alias Ribosomal protein L35Ae family protein 0.05 Orthogroups_2024-Update
Glyma.05G132500 No alias Ribosomal protein L35Ae family protein 0.04 Orthogroups_2024-Update
Glyma.08G087000 No alias Ribosomal protein L35Ae family protein 0.04 Orthogroups_2024-Update
Glyma.14G062900 No alias Ribosomal protein L35Ae family protein 0.02 Orthogroups_2024-Update
HORVU6Hr1G026460.1 No alias component *(eL33) of large ribosomal-subunit (LSU) proteome 0.03 Orthogroups_2024-Update
Kfl00148_0220 kfl00148_0220_v1.1 (at3g55750 : 81.6) Ribosomal protein L35Ae family... 0.03 Orthogroups_2024-Update
Mp1g11470.1 No alias component RPL35a of LSU proteome component 0.06 Orthogroups_2024-Update
PSME_00007301-RA No alias (at1g74270 : 157.0) Ribosomal protein L35Ae family... 0.02 Orthogroups_2024-Update
Potri.008G059400 No alias Ribosomal protein L35Ae family protein 0.03 Orthogroups_2024-Update
Potri.010G194200 No alias Ribosomal protein L35Ae family protein 0.02 Orthogroups_2024-Update
Potri.010G199400 No alias Ribosomal protein L35Ae family protein 0.05 Orthogroups_2024-Update
Pp1s1_549V6 No alias 60s ribosomal protein 0.06 Orthogroups_2024-Update
Pp1s2_655V6 No alias 60s ribosomal protein 0.06 Orthogroups_2024-Update
Pp1s52_116V6 No alias 60s ribosomal protein 0.07 Orthogroups_2024-Update
Pp1s61_123V6 No alias 60s ribosomal protein 0.04 Orthogroups_2024-Update
Sobic.002G179300.1 No alias component *(eL33) of large ribosomal-subunit (LSU) proteome 0.06 Orthogroups_2024-Update
Sobic.010G070500.1 No alias component *(eL33) of large ribosomal-subunit (LSU) proteome 0.05 Orthogroups_2024-Update
Solyc03g096360 No alias 60S ribosomal protein L35a (AHRD V3.3 *** B6VC50_VERFO) 0.06 Orthogroups_2024-Update
Solyc05g052810 No alias 60S ribosomal protein L35a (AHRD V3.3 *** B6VC50_VERFO) 0.05 Orthogroups_2024-Update
Sopen03g026480 No alias Ribosomal protein L35Ae 0.05 Orthogroups_2024-Update
evm.model.contig_2130.2 No alias (at1g74270 : 120.0) Ribosomal protein L35Ae family... 0.07 Orthogroups_2024-Update
evm.model.tig00020723.23 No alias (at3g55750 : 148.0) Ribosomal protein L35Ae family... 0.06 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0003735 structural constituent of ribosome IEA InterProScan predictions
CC GO:0005622 intracellular IEA InterProScan predictions
CC GO:0005840 ribosome IEA InterProScan predictions
BP GO:0006412 translation IEA InterProScan predictions
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Type GO Term Name Evidence Source
MF GO:0003684 damaged DNA binding IEP Predicted GO
MF GO:0003723 RNA binding IEP Predicted GO
CC GO:0005789 endoplasmic reticulum membrane IEP Predicted GO
BP GO:0006289 nucleotide-excision repair IEP Predicted GO
BP GO:0006487 protein N-linked glycosylation IEP Predicted GO
BP GO:0010498 proteasomal protein catabolic process IEP Predicted GO
BP GO:0018196 peptidyl-asparagine modification IEP Predicted GO
BP GO:0018279 protein N-linked glycosylation via asparagine IEP Predicted GO
MF GO:0019843 rRNA binding IEP Predicted GO
BP GO:0022613 ribonucleoprotein complex biogenesis IEP Predicted GO
BP GO:0030163 protein catabolic process IEP Predicted GO
MF GO:0031072 heat shock protein binding IEP Predicted GO
BP GO:0042254 ribosome biogenesis IEP Predicted GO
BP GO:0043161 proteasome-mediated ubiquitin-dependent protein catabolic process IEP Predicted GO
BP GO:0044085 cellular component biogenesis IEP Predicted GO
CC GO:0044432 endoplasmic reticulum part IEP Predicted GO
MF GO:0051082 unfolded protein binding IEP Predicted GO
BP GO:1901565 organonitrogen compound catabolic process IEP Predicted GO
InterPro domains Description Start Stop
IPR001780 Ribosomal_L35A 12 106
No external refs found!